View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2277_low_4 (Length: 491)

Name: NF2277_low_4
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2277_low_4
NF2277_low_4
[»] chr4 (3 HSPs)
chr4 (1-475)||(42082889-42083341)
chr4 (11-247)||(42086384-42086611)
chr4 (272-442)||(42086665-42086825)
[»] chr7 (3 HSPs)
chr7 (283-334)||(22284482-22284533)
chr7 (277-323)||(37603915-37603961)
chr7 (266-330)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (266-321)||(6933139-6933194)
chr2 (283-328)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (277-323)||(30922528-30922574)
chr8 (272-323)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (283-319)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 42082889 - 42083341
Alignment:
Q  1 atcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgagataccatatcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  42082889 atcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgagataccgtatcaaa 42082988  T
Q  101 cctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtactaatgactcaacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                          
T  42082989 cctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc---------------------- 42083066  T
Q  201 acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42083067 acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaat 42083166  T
Q  301 ggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatcttaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42083167 ggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatcttaa 42083266  T
Q  401 aatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttat 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42083267 aatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttat 42083341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 42086384 - 42086611
Alignment:
Q  11 ttaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgagataccatatcaaacctgtcaaac 110  Q
    ||||||||||||||||||  |||| |||| ||||||||| || |  ||||||| || || ||||||||||| | ||| ||||| ||||||| || | ||     
T  42086384 ttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtgttgaggtaccacatcaaacatggctaat 42086480  T
Q  111 tgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttc 210  Q
    ||||| ||||| |||||||| |||| ||||| | | || ||||||| |||||||  ||||||||||||||  ||||||||||| |||||||||||||||     
T  42086481 tgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaagaggtactaatgaatcaaccacctgtttt- 42086579  T
Q  211 acaaccaccaaaaggaagaaaacaatattcagttcta 247  Q
         ||||||||||||||||||||| ||||||||||    
T  42086580 -----caccaaaaggaagaaaacaatgttcagttcta 42086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 442
Target Start/End: Original strand, 42086665 - 42086825
Alignment:
Q  272 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 371  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  || |||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtc-gtgct 42086759  T
Q  372 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttac 442  Q
    ||||||||||||||    | ||| ||| |||||||||| ||| ||||||| || | |||||||||||||||    
T  42086760 acatagctttcaaa----tcataccttcaaatttaatatatgcacatgga-gaaagggttttgtgacttac 42086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  283 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 334  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  277 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 323  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  266 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 330  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  266 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 321  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  283 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 328  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  277 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 323  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  272 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 323  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  283 gataataatttgaaaaatggaagaaattgaatgtaac 319  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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