View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2277_low_6 (Length: 435)

Name: NF2277_low_6
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2277_low_6
NF2277_low_6
[»] chr8 (3 HSPs)
chr8 (10-371)||(7661597-7661972)
chr8 (240-371)||(34229099-34229242)
chr8 (308-368)||(16533019-16533079)
[»] chr1 (1 HSPs)
chr1 (240-370)||(26273373-26273507)
[»] chr2 (2 HSPs)
chr2 (240-369)||(19952279-19952412)
chr2 (279-371)||(42476688-42476780)
[»] chr7 (2 HSPs)
chr7 (216-323)||(10223190-10223305)
chr7 (243-353)||(36906739-36906849)
[»] chr3 (2 HSPs)
chr3 (240-370)||(43136104-43136242)
chr3 (245-340)||(37382703-37382802)
[»] chr5 (1 HSPs)
chr5 (240-371)||(1279961-1280108)
[»] chr6 (1 HSPs)
chr6 (232-371)||(1296166-1296313)
[»] scaffold0295 (1 HSPs)
scaffold0295 (296-353)||(13377-13433)
[»] scaffold0003 (1 HSPs)
scaffold0003 (296-353)||(161497-161553)
[»] chr4 (1 HSPs)
chr4 (296-332)||(29657725-29657761)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 7661597 - 7661972
Alignment:
Q  10 catcatcagcgacaagtaattattatcattgttattaagattgcaaaagttcatttctccaatattgtaaaaaagcaaaatatgtgaactttatctattt 109  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7661597 catcatcagtgacaagtaattattatcattgttattaagattgcaaaagttcatttctccaatattgtaaaaaagcaaaatatgtgaactttatctattt 7661696  T
Q  110 tgtgagaattttgtccaaagaaaattagaatatta-----------------tttaatgtattatatgcaatattcatataataaaa-tacttacatgtc 191  Q
    | |||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7661697 tatgagaattttgtccaaagaaaattagaatattactataagttatatcaaatttaatgtattatatgcaatattcatataataaaaatacttacatgtc 7661796  T
Q  192 atttttgttagtatatgaatgaatacctcataccataaacaaatattcaatttacacatccaatttttcaattaacacaattccaaattctaaaacccta 291  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7661797 atttttgttagtatatgaatgaatacctcataccataaa----tattcaatttacacatccaatttttcaattaacacaattccaaattctaaaacccta 7661892  T
Q  292 caataaggaaggagaaattagataatcaattggcttacctttagagtgaatgagaactgagatattagcaaccaaataac 371  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7661893 caataaggaaggagaaattagagaatcaattggcttacctttagagtgaatgagaactgagagattagcaaccaaataac 7661972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 34229099 - 34229242
Alignment:
Q  240 aatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaataaggaag------------gagaaattagataatcaattggctt 327  Q
    |||||||| |||||||||||||| ||| |||||||| ||||||||||||||| || |||||||            |||||||| || ||||||||| |||    
T  34229099 aatttacatatccaatttttcaagtaaaacaattcccaattctaaaaccctaaaacaaggaaggaagaaatgaacgagaaattggagaatcaattgactt 34229198  T
Q  328 acctttagagtgaatgagaactgagatattagcaaccaaataac 371  Q
     |||||||||||| |||||||||| | |||||||||||||||||    
T  34229199 gcctttagagtgagtgagaactgacaaattagcaaccaaataac 34229242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 16533019 - 16533079
Alignment:
Q  308 attagataatcaattggcttacctttagagtgaatgagaactgagatattagcaaccaaat 368  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||    
T  16533019 attagagaatcaattggcttacctttagagtgagtgagaactgagagattatcaaccaaat 16533079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 26273373 - 26273507
Alignment:
Q  240 aatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaat----aaggaaggagaaattagataatcaattggcttacctttag 335  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    |||||| |||||||| || ||||||||| ||| |||||||    
T  26273373 aatttacacatccaatttttcaattaacacaattcccaattctaaaaccctaaaataaagaaggaatgagaaattggagaatcaattgactttcctttag 26273472  T
Q  336 agtgaatgagaactgagatattagcaaccaaataa 370  Q
    ||||| |||||||||||| ||||||||| ||||||    
T  26273473 agtgagtgagaactgagagattagcaacaaaataa 26273507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 240 - 369
Target Start/End: Original strand, 19952279 - 19952412
Alignment:
Q  240 aatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaataagg----aaggagaaattagataatcaattggcttacctttag 335  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||| || ||||    ||| ||||||| || ||||||||| |||||||||||    
T  19952279 aatttacacatccaatttttcaattaacacaattctcaattctaaaaccctaaaaaaaggaagaaagaagaaattggagaatcaattgacttacctttag 19952378  T
Q  336 agtgaatgagaactgagatattagcaaccaaata 369  Q
    ||||| ||||||| |||| |||||||| ||||||    
T  19952379 agtgagtgagaaccgagagattagcaatcaaata 19952412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 371
Target Start/End: Complemental strand, 42476780 - 42476688
Alignment:
Q  279 ttctaaaaccctacaataaggaagga----gaaattagataatcaattggcttacctttagagtgaatgagaactgagatattagcaaccaaataac 371  Q
    |||||||||||||||| |||||||||    ||||||  | |||||||||||||| |||||||||||||||||    ||| |||||||||||||||||    
T  42476780 ttctaaaaccctacaacaaggaaggaatgagaaattgaagaatcaattggcttatctttagagtgaatgaga----agagattagcaaccaaataac 42476688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 10223305 - 10223190
Alignment:
Q  216 acctcataccataaacaaatattcaatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaa--------taaggaaggagaa 307  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||         ||||||||||||    
T  10223305 acctcataccagaaacaaatatccaatttacacatcaaatttttcaattaacacaattcccaattctaaaaccctaaaacaaagaaggaaggaaggagaa 10223206  T
Q  308 attagataatcaattg 323  Q
    ||||||||||||||||    
T  10223205 attagataatcaattg 10223190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 36906739 - 36906849
Alignment:
Q  243 ttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaataaggaagg---agaaattagataatcaattggcttacctttagagtg 339  Q
    ||||||||||||| || |||||||||  ||||| ||||||||||||||| |  ||||||||   | ||||| || |||||||||||||| | | ||||||    
T  36906739 ttacacatccaatgttccaattaaca--attcctaattctaaaaccctaaagcaaggaaggataaaaaattggagaatcaattggcttatc-tcagagtg 36906835  T
Q  340 aatgagaactgaga 353  Q
    | ||||||| ||||    
T  36906836 agtgagaaccgaga 36906849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 43136242 - 43136104
Alignment:
Q  240 aatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaataaggaagga--------gaaattagataatcaattggcttacct 331  Q
    ||||||||||||  ||||||||| |||||||||||| ||||||||||||||| |  |||||||||        |||||| || ||||||||| |||||||    
T  43136242 aatttacacatctcatttttcaactaacacaattcccaattctaaaaccctaaatcaaggaaggaaggaagaagaaattggagaatcaattgacttacct 43136143  T
Q  332 ttagagtgaatgagaactgagatattagcaaccaaataa 370  Q
    ||||||||| |||||||||||| ||||| ||||||||||    
T  43136142 ttagagtgagtgagaactgagagattagaaaccaaataa 43136104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 37382703 - 37382802
Alignment:
Q  245 acacatccaatttttcaattaacacaattccaaattctaaaaccctacaa----taaggaaggagaaattagataatcaattggcttacctttagagtga 340  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||| ||     ||||||||||||||| || ||||||||| ||||||||||||||||    
T  37382703 acacatctaatttttcaattaacacaattctcagttctaaaaccctaaaacaaggaaggaaggagaaattcgagaatcaattgacttacctttagagtga 37382802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 1280108 - 1279961
Alignment:
Q  240 aatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaataaggaag----------------gagaaattagataatcaattg 323  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||| || |||||||                |||||||| || |||||||||    
T  1280108 aatttacacatccaatttttcaattcacaaaattcccaattctaaaaccctaaaacaaggaaggaaggaaggaaggaatgagaaattggagaatcaattg 1280009  T
Q  324 gcttacctttagagtgaatgagaactgagatattagcaaccaaataac 371  Q
     ||||||||||||||||||||||||||||| |||| |||  |||||||    
T  1280008 acttacctttagagtgaatgagaactgagagattaacaattaaataac 1279961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 371
Target Start/End: Complemental strand, 1296313 - 1296166
Alignment:
Q  232 aaatattcaatttacacatccaatttttcaattaacacaattccaaattctaaaaccctacaa--------taaggaaggagaaattagataatcaattg 323  Q
    ||||||||||||||| ||||||||||||||||||| ||||||   ||||||||||| | | ||         |||||| ||||||||||| ||| |||||    
T  1296313 aaatattcaatttacgcatccaatttttcaattaatacaattatcaattctaaaactccaaaacatagaaggaaggaatgagaaattagaaaattaattg 1296214  T
Q  324 gcttacctttagagtgaatgagaactgagatattagcaaccaaataac 371  Q
    |||||||||||  | || |||||| ||||| ||||  |||||||||||    
T  1296213 gcttacctttaaggcgagtgagaaatgagagattatgaaccaaataac 1296166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 13377 - 13433
Alignment:
Q  296 aaggaaggagaaattagataatcaattggcttacctttagagtgaatgagaactgaga 353  Q
    |||||| |||||||| || ||| |||||||||||| ||||||||| ||||||||||||    
T  13377 aaggaatgagaaattggagaatgaattggcttacc-ttagagtgagtgagaactgaga 13433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 161497 - 161553
Alignment:
Q  296 aaggaaggagaaattagataatcaattggcttacctttagagtgaatgagaactgaga 353  Q
    |||||| |||||||| || ||| |||||||||||| ||||||||| ||||||||||||    
T  161497 aaggaatgagaaattggagaatgaattggcttacc-ttagagtgagtgagaactgaga 161553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 29657761 - 29657725
Alignment:
Q  296 aaggaaggagaaattagataatcaattggcttacctt 332  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  29657761 aaggaatgagaaattagagaatcaattggcttacctt 29657725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University