View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_7 (Length: 434)
Name: NF2277_low_7
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 11369734 - 11370143
Alignment:
| Q |
18 |
tcttaatgttttcatctactcatttcatttcttattggggtctaaggtcatggtttaataaaattaagctttgttttttggtcttccttatttatgtttt |
117 |
Q |
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| T |
11369734 |
tcttaatgttttcatctactcatttcatttcttattggggtctaaggtcatggtttaataaaattaagctttgttttttggtcttccttatttatgtttt |
11369833 |
T |
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| Q |
118 |
ggaagtcagtattttggtatttgaaatattatgaatcgattatttattattgactgatgcgcatctttgctcagtttaagtggctgcaatgcaagaatta |
217 |
Q |
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| T |
11369834 |
ggaagtcagtattttggtatttgaaatattatgaatcgattatttattattgattgatgcgcatctttgctcagtttaagtggctgcaatgcaagaatta |
11369933 |
T |
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| Q |
218 |
atgattgtatatgagtgtttgttgctgtaatgagatgtttataagttgaagttgcattttttgacgaaatttgacacattaggtgcagggattgatgtgt |
317 |
Q |
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| T |
11369934 |
atgattgtgtatgagtgtttgttgctgtaatgagatgtttataagttgaagttgcattttttgacgaaatttgacacattaggtgcagggattgatgtgt |
11370033 |
T |
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| Q |
318 |
tgttttcgaaaacgggtgtaccagtaacacttgagttttgcaaattaggtgttgttttattttatatgtagctgtcgggtcagttgggcatggagttttt |
417 |
Q |
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| T |
11370034 |
tgttttcgaaaacgggtgtaccagtaccacttgagttttgcaaattaggtgttgttttattttatatgtagccgtcgggtctgttgggcatggagttttt |
11370133 |
T |
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| Q |
418 |
gtcccctatg |
427 |
Q |
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| T |
11370134 |
gtcctctatg |
11370143 |
T |
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