View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2277_low_9 (Length: 409)
Name: NF2277_low_9
Description: NF2277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2277_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 12921871 - 12921478
Alignment:
| Q |
1 |
aagaggcaaactctgcgcaatgtctctgtttgcaacatacggtttcttgatatggaaatcagaagtgaagatttttgctatataaaaataaaattaatcc |
100 |
Q |
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| T |
12921871 |
aagaggcaaactctgcgcaatgtctctgtttgcaacacacggtttcttgatatggaaatcagaagtgaagatttttgctatataaaaataaaattaatcc |
12921772 |
T |
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| Q |
101 |
ctcnnnnnnnnncaaatttaggtcagttagatccagccaattcaccataatcaaaaaagagaaattagaagacatggaattggccttcttatgtttgcag |
200 |
Q |
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| T |
12921771 |
ctcaaaaaaaaacaaatttaggtcagttagatccagccaattcaccataatcaaaaaagagaaattagaagaaatggaattggccttcttatgtttgcag |
12921672 |
T |
|
| Q |
201 |
cactaaccttgcttagcaaaaagtgtaaaagggagttttgttatgaaattagaagnnnnnnngcaagaagggacacaattttttgcttctactacatggt |
300 |
Q |
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| T |
12921671 |
cactaaccttgcttagcaaaaagtgtaaaagggagctttgttatgaaattagaagaaaaaaagcaagaagggacacaattttttgcttctactacatggt |
12921572 |
T |
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| Q |
301 |
tttaatctcttaattattaaacataattggggttatatgtttgatgaaatgcttattgtatataggggactagtatccaattcaggaaatgtgt |
394 |
Q |
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| T |
12921571 |
tttaatctcttaattattaaacataattggggttatatgtttgatgaaatgcttattgtatatagggaactagtatccaattcaggaaatgtgt |
12921478 |
T |
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