View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2278_high_10 (Length: 220)
Name: NF2278_high_10
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2278_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36147379 - 36147583
Alignment:
| Q |
1 |
aacaacatgagtcttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttctttctcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147379 |
aacaacatgagtcttctcttagtattattcccacaagacaaatcatccaccacaacaacaactaaactaaattcaccttcctcttcctcttctttctcac |
36147478 |
T |
|
| Q |
101 |
catca---tcatcttcaaaatctctcattatctccaaagcacaatccacactctcaatttgtgcacttctcctattcacaactctcctcctcttcaccct |
197 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36147479 |
catcatcttcttcttcaaaatctctcattatctccaaagcacaatctacactctcaatctgtgcacttctcctcttcacaactctcctcctcttcaccct |
36147578 |
T |
|
| Q |
198 |
ctcca |
202 |
Q |
| |
|
||||| |
|
|
| T |
36147579 |
ctcca |
36147583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University