View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2278_high_4 (Length: 310)
Name: NF2278_high_4
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2278_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 5957985 - 5957676
Alignment:
| Q |
1 |
tcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaa |
100 |
Q |
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| T |
5957985 |
tcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaaaa |
5957886 |
T |
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| Q |
101 |
caatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacactcgacggtggcccacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
5957885 |
caatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggcggcccacc |
5957786 |
T |
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| Q |
201 |
aggtgctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgcacacgcaccgtaggtaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5957785 |
aggtgctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgcacacgcaccgtaggtaga |
5957686 |
T |
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| Q |
301 |
aactccctct |
310 |
Q |
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|||||||||| |
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| T |
5957685 |
aactccctct |
5957676 |
T |
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