View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2278_high_5 (Length: 253)
Name: NF2278_high_5
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2278_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 2018104 - 2018013
Alignment:
| Q |
154 |
attatataatacgaatatgtataaatcatctaaaatcaatgttatcaatcataaatccctttacgctgcactgccatagcgccactataacc |
245 |
Q |
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| T |
2018104 |
attatataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaatccctttacgctgcactgtcatagcgccactataacc |
2018013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 2035625 - 2035535
Alignment:
| Q |
49 |
aatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaattctg-aaagaaacatgaaagggacatatata |
138 |
Q |
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| T |
2035625 |
aatccatcaaatacgaagtatctgaagcaccagaaaaagaacaatccaatcaaagccaattctgaaaagaaacatgaaagggacatatata |
2035535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 2018245 - 2018177
Alignment:
| Q |
40 |
aatccatcaaatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaagccaat |
108 |
Q |
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| T |
2018245 |
aatccttcgaatccatcaaatccaaagtatctgaagcaccagaaaaagaacattccaatcaaagccaat |
2018177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 2020798 - 2020705
Alignment:
| Q |
49 |
aatccatcaaatccaaaatatctgaagcaccagaaaaagaacaattcaatcaaa-gccaattctgaaa-gaaacatgaaagggacatatatatg |
140 |
Q |
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| T |
2020798 |
aatccattaaatccttagtatctgaaacaccaaaaatagaacaatccaatcaaaagccaattctgaaaagaaacatgaaagggacatatatatg |
2020705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 2018256 - 2018222
Alignment:
| Q |
20 |
attagcgacccaatccttcgaatccatcaaatcca |
54 |
Q |
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| T |
2018256 |
attagcgacccaatccttcgaatccatcaaatcca |
2018222 |
T |
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