View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2278_low_2 (Length: 425)
Name: NF2278_low_2
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2278_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17771435 - 17771214
Alignment:
| Q |
1 |
tgccaagttagatgctattatatgctttcataacttaccatttcttgactttatataattaaatcagtatgagtcaataggacaaaaatcttctatttca |
100 |
Q |
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| T |
17771435 |
tgccaagttagatgctattatatgctttcataacttaccatttcttgactttatataattaaatcc-tatgagtcaataggacaaaaatcttctatttca |
17771337 |
T |
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| Q |
101 |
acctcagaatcaaccctttagattcctgtcacagaaaacaaaagatgattcaagaaactaatgccaaaaatattgatgaggtcggtgcctatattgtctc |
200 |
Q |
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| T |
17771336 |
acctcagaatcaaccctttagattcttgtcacagaaaacaaaagatgattcaagaaactaatgccaaaaatattgatgaggtcggtgcctatattgtctc |
17771237 |
T |
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| Q |
201 |
attctaacaaacaagaagacaag |
223 |
Q |
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| T |
17771236 |
attctaacaaacaagaagacaag |
17771214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 340
Target Start/End: Complemental strand, 17771173 - 17771097
Alignment:
| Q |
264 |
taacaccaacaacaagaaatggtacaaattagaagttagtttcccttaaagttagggaaacaaattctaccacttga |
340 |
Q |
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| T |
17771173 |
taacaccaacaacaagaaatggtacaaattagaagttagtttcccttaaagttagggaaacaaattctaccacttga |
17771097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 414
Target Start/End: Complemental strand, 17771053 - 17771023
Alignment:
| Q |
384 |
gtcaacattattatacaatatggctaatatt |
414 |
Q |
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| T |
17771053 |
gtcaacattattatacaatatggctaatatt |
17771023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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