View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2278_low_3 (Length: 330)
Name: NF2278_low_3
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2278_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 26688988 - 26689290
Alignment:
| Q |
23 |
taaattgggagtttactcattcatttaatttacagtttaaactaagtnnnnnnnttcaaaattccacccaaagtttaaaagaatctcttgactcacaaga |
122 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26688988 |
taaatttggagtttactcattcattttatttacagtttaaactaagtaaaaaa-ttcaaaattccacccaaagtttaaaagaatctcttgactcacaaga |
26689086 |
T |
|
| Q |
123 |
gagactaaccaataatatacaatgatctgaacacaacaggcttacccccaaataatcctgttctgtgaaagtgaaactatttggaagtattttcaaatac |
222 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26689087 |
gagactaaccaataatatacaatcatctgaacacaacaggcttacccccaaataatcctgttctgtgaaagtgaaactatttggaagtattttcaaatac |
26689186 |
T |
|
| Q |
223 |
tatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttctttcttattagtctcttctaactctctattttcatctc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26689187 |
tatgatgcattttgtgattgattgttgcttcccagctgtaactggacccttctgttgtcttctttcttattagtctcttctaactctctattttcatttc |
26689286 |
T |
|
| Q |
323 |
actc |
326 |
Q |
| |
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|||| |
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| T |
26689287 |
actc |
26689290 |
T |
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