View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2278_low_9 (Length: 236)

Name: NF2278_low_9
Description: NF2278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2278_low_9
NF2278_low_9
[»] chr3 (5 HSPs)
chr3 (1-111)||(41416183-41416293)
chr3 (5-112)||(24566129-24566236)
chr3 (5-92)||(55447297-55447383)
chr3 (151-202)||(35964155-35964206)
chr3 (117-165)||(35964206-35964254)
[»] chr4 (2 HSPs)
chr4 (1-107)||(41415927-41416033)
chr4 (69-112)||(13894091-13894134)
[»] chr5 (2 HSPs)
chr5 (113-202)||(19902429-19902518)
chr5 (69-116)||(5672419-5672466)
[»] chr2 (1 HSPs)
chr2 (114-193)||(28005935-28006014)
[»] chr8 (1 HSPs)
chr8 (158-210)||(11728858-11728910)
[»] chr7 (2 HSPs)
chr7 (5-71)||(36366098-36366164)
chr7 (69-110)||(13331948-13331989)
[»] chr1 (1 HSPs)
chr1 (69-111)||(44305800-44305842)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-102)||(18122-18219)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41416183 - 41416293
Alignment:
Q  1 caaacaaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcctgggaatacattttcattccacgtaacaa 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  41416183 caaacaaacacttttatcaaactttcctaggaataaaattcccactctaacattcctaggaacgttaatcctgggaatacattttcattccatgtaacaa 41416282  T
Q  101 acacaccctaa 111  Q
    |||||||||||    
T  41416283 acacaccctaa 41416293  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 24566129 - 24566236
Alignment:
Q  5 caaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcctgggaatacattttcattccacgtaacaaacac 104  Q
    |||||||||||  ||||||||| |||||||||| || ||||||| | | |||||||||||||||||| | |||||  |||| |||||| | ||||||| |    
T  24566129 caaacactttttccaaactttcctaggaataaagtttccactcttataatcctaggaaagttaatcccgagaatattttttgattccatgaaacaaacgc 24566228  T
Q  105 accctaag 112  Q
     |||||||    
T  24566229 cccctaag 24566236  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 55447383 - 55447297
Alignment:
Q  5 caaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcctgggaatacattttcattcca 92  Q
    ||||||||||| |||| ||||| ||| ||||||| ||| |||||||| |||||| ||||||||||||   ||||||||||||||||||    
T  55447383 caaacacttttgtcaatctttcctagcaataaaaatcc-actctaactttcctaagaaagttaatcccaagaatacattttcattcca 55447297  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 35964206 - 35964155
Alignment:
Q  151 tattttgtgagggatgtttaaaccattccctcactaataattggaaattcaa 202  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||  |||||||    
T  35964206 tattttgtgatggatgtttaaaccattccctcacaaatgattgtcaattcaa 35964155  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 35964254 - 35964206
Alignment:
Q  117 aactcatcaattctgtgagggatttagtgacgggtattttgtgagggat 165  Q
    |||||||||||| | |||||||||||||||| | |||||| ||||||||    
T  35964254 aactcatcaattttctgagggatttagtgactgatattttatgagggat 35964206  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41416033 - 41415927
Alignment:
Q  1 caaacaaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcctgggaatacattttcattccacgtaacaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||| || |||||||    
T  41416033 caaacaaacacttttatcaaacttttttaggaataaaattttcactctaacattcctaggaaagttaattatgggaatacattttcatttcatgtaacaa 41415934  T
Q  101 acacacc 107  Q
    |||||||    
T  41415933 acacacc 41415927  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 13894091 - 13894134
Alignment:
Q  69 tcctgggaatacattttcattccacgtaacaaacacaccctaag 112  Q
    |||| ||||||||||||||||||| | |||||||||||||||||    
T  13894091 tcctaggaatacattttcattccatgaaacaaacacaccctaag 13894134  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 19902429 - 19902518
Alignment:
Q  113 gtttaactcatcaattctgtgagggatttagtgacgggtattttgtgagggatgtttaaaccattccctcactaataattggaaattcaa 202  Q
    |||||||| |||||||   | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  19902429 gtttaacttatcaatttgctaagggatttagggacgggtattttgtgagggatgtttaaaccattccctctctaatcattggcaattcaa 19902518  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 5672419 - 5672466
Alignment:
Q  69 tcctgggaatacattttcattccacgtaacaaacacaccctaaggttt 116  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||||    
T  5672419 tcctaggaatacattttcattccatgaaacaaacacaccctaaggttt 5672466  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 28006014 - 28005935
Alignment:
Q  114 tttaactcatcaattctgtgagggatttagtgacgggtattttgtgagggatgtttaaaccattccctcactaataattg 193  Q
    ||||| ||||||||| |  |||||||||||| || |||| |||||||||||| ||||||| ||||| |||||||| ||||    
T  28006014 tttaattcatcaatttttcgagggatttagtcacaggtagtttgtgagggatttttaaactattccatcactaatcattg 28005935  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 11728858 - 11728910
Alignment:
Q  158 tgagggatgtttaaaccattccctcactaataattggaaattcaaaatttgta 210  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||| |||||||    
T  11728858 tgagggatgtttaaaccattctctcactggtaattggtaattcaatatttgta 11728910  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 36366164 - 36366098
Alignment:
Q  5 caaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcc 71  Q
    |||||||||||  ||||||||| |||||||||| || ||||||| | | |||| |||||||||||||    
T  36366164 caaacactttttccaaactttcctaggaataaagtttccactcttataatcctgggaaagttaatcc 36366098  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 13331948 - 13331989
Alignment:
Q  69 tcctgggaatacattttcattccacgtaacaaacacacccta 110  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  13331948 tcctaggaatacattttcattccatgaaacaaacacacccta 13331989  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 44305842 - 44305800
Alignment:
Q  69 tcctgggaatacattttcattccacgtaacaaacacaccctaa 111  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  44305842 tcctaggaatacattttcattccatgaaacaaacacaccctaa 44305800  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 18219 - 18122
Alignment:
Q  5 caaacacttttatcaaactttcttaggaataaaattcccactctaacattcctaggaaagttaatcctgggaatacattttcattccacgtaacaaac 102  Q
    |||||||||||  ||||||||| ||||| |||| || ||||||| | | |||| ||||||||||||| | |||||  |||| |||||| | |||||||    
T  18219 caaacactttttccaaactttcctaggagtaaagtttccactcttataatcctgggaaagttaatcccgagaatattttttgattccatgaaacaaac 18122  T

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