View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2279_high_14 (Length: 248)
Name: NF2279_high_14
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 9288317 - 9288539
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9288317 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
9288416 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9288417 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgtggatgtt |
9288516 |
T |
|
| Q |
215 |
gatgtggcttcccatgtgttcat |
237 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
9288517 |
gatgtggcttcccatgtcttcat |
9288539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 9367795 - 9367589
Alignment:
| Q |
22 |
ggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggccttt |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
9367795 |
ggtgtcccttgtgatgccgcagatatccaaaattttcactgaaccatccaacaactcttcaacaaatttctcaccttgacggtg---agcaatggccttt |
9367699 |
T |
|
| Q |
122 |
tgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgttgatgtgg |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9367698 |
tgtgttgatgacatattgagaagattttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatcagatgtcgatgttgatgtgg |
9367599 |
T |
|
| Q |
222 |
cttcccatgt |
231 |
Q |
| |
|
|||||||||| |
|
|
| T |
9367598 |
cttcccatgt |
9367589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 9297456 - 9297669
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||| || ||| |
|
|
| T |
9297456 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaataattcttccacaaatttctcaccttgatggtg---agaaat |
9297552 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
9297553 |
agccttttgtgttgatgacatgttgagaagatcttccaaagaaatatacaaatcttcaagaaaggaaaggccagtggtaattgaatcagatgtggatgtt |
9297652 |
T |
|
| Q |
215 |
gatgtggcttcccatgt |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9297653 |
gatgtggcttcccatgt |
9297669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 9351818 - 9352031
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
9351818 |
gtaacatgatgtcccttgtgatgccacatatatccaaaactttcactgaaccatccaacaactcttccacaaatttctcaccttgatggtg---agcaaa |
9351914 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9351915 |
ggccttttgtgttgatgacatattgagaagatcttccaaggaaatatacaaatcttcaagcaagaaaaggccattggtaattgaatcagatgtggatgtt |
9352014 |
T |
|
| Q |
215 |
gatgtggcttcccatgt |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9352015 |
gatgtggcttcccatgt |
9352031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 9332090 - 9332303
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
9332090 |
gtaacatgatgtcccttgtgatgccacatatatccaaaactttcactgaaccatccaacaactcttccacaaatttctcaccttgatggtg---agcaaa |
9332186 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9332187 |
ggccttttgtgttgatgacatattgagaagatcttccaaggaaatatacaaatcttcaagcaagaaaaggccattggtaattgaatcagatgtggatgtt |
9332286 |
T |
|
| Q |
215 |
gatgtggcttcccatgt |
231 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
9332287 |
gatgtggctttccatgt |
9332303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 9310170 - 9309959
Alignment:
| Q |
23 |
gtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggcctttt |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||| ||| ||||||| |
|
|
| T |
9310170 |
gtgtcccttgtgatgccacaaatatccaaaactttcactgaaccatccaacaattcttcgacaaatttctcgcc---atgatggtgagaaatagcctttt |
9310074 |
T |
|
| Q |
123 |
gtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgttgatgtggc |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9310073 |
gtgttgatgacatgttgagaagatcttccaaagaaatatacaaatcttcaagaaaggaaaggccagtggtaattgaatcagatgtggatgttgatgtggc |
9309974 |
T |
|
| Q |
223 |
ttcccatgtgttcat |
237 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
9309973 |
ttcccatgtcttcat |
9309959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 9292849 - 9293062
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||| || ||| |
|
|
| T |
9292849 |
gtaacacgatgtccctggtgatgccacagatatccaaaactttcattgaaccatccagcaactcttccacaaatttctcaccctgatggtg---agaaat |
9292945 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
9292946 |
agccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaaggaaaggccagtggtaattgaatcagatgtggatgtt |
9293045 |
T |
|
| Q |
215 |
gatgtggcttcccatgt |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9293046 |
gatgtggcttcccatgt |
9293062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 9349204 - 9348985
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
9349204 |
gtaacatggtgtcccttgtgatgccacatatatccaaaactttcaccgaaccatccaacaactcttccacaaatttctcaccttgatggtg---agcaat |
9349108 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| |||||||| | |||||||| | ||||| ||||||| |
|
|
| T |
9349107 |
ggccttttgtgttgatgacatatgtagaaaatcctccaaagatatatacaaatcttcaagaaaggaaaggccggtagtaattgactcagatgtggatgtt |
9349008 |
T |
|
| Q |
215 |
gatgtggcttcccatgtgttcat |
237 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
9349007 |
gatgtggcttcccatgtcttcat |
9348985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 9373708 - 9373495
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| || |
|
|
| T |
9373708 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttccacaaatttctcacct---tgatggtgagaaac |
9373612 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9373611 |
aagcttctgtgttgatgtcatatttagaagatcttccaaagatatatacaaatcttcaagcaagaagaggccattggtaattgaatcagatgtggatgtt |
9373512 |
T |
|
| Q |
215 |
gatgtggcttcccatgt |
231 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9373511 |
gatgtggcttcccatgt |
9373495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 9356582 - 9356367
Alignment:
| Q |
19 |
catggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggcc |
118 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||| || || |||| |
|
|
| T |
9356582 |
catggtgtctcttgtgatgccacatatatctaaaagtttcaccgaaccatccaacaactcttccacaaatttctcaccttgatggtg---agaaacggcc |
9356486 |
T |
|
| Q |
119 |
ttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgttgatg |
218 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
9356485 |
ttttgtgttgatgacatatgtagaagatcatccaaagaaatatacaaatcttcaagaaaggaaaggccagtggtaattgaatcagatgtggatgttgatg |
9356386 |
T |
|
| Q |
219 |
tggcttcccatgtgttcat |
237 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
9356385 |
tagcttcccatgtcttcat |
9356367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 9305289 - 9305508
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||| | ||||| ||||||||||||||||||||| ||||||||||||||| ||||||| | ||| |
|
|
| T |
9305289 |
gtaacatagtgtcccttgtaatgccacatatatccaacattttcattgaaccatccaacaactcttccacaaatttctcaccttgatggtgagaaacaag |
9305388 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||| || | ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
9305389 |
---cttctgtgttgatgtcatatttagaagatcttccaaagatatatacaaatcttcaagcaagaagaggccattggtaattgaatcagatgtggatgtt |
9305485 |
T |
|
| Q |
215 |
gatgtggcttcccatgtgttcat |
237 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
9305486 |
gatgtggcttcccatgtcttcat |
9305508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 9301671 - 9301890
Alignment:
| Q |
15 |
gtaacatggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaat |
114 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||| | ||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||| || |
|
|
| T |
9301671 |
gtaacatagtgtcccttgtaatgccacatatatccaacattttcattgaaccatccaacaactcttccacaaatttctcacc---atgatggtgagaaac |
9301767 |
T |
|
| Q |
115 |
ggccttttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaaggccattggtaattgaatgagatgcggatgtt |
214 |
Q |
| |
|
||| |||||||||| || ||| ||||||||||||||||| ||||||||||||||||| || | |||||||| |||||||||| ||||| ||||||| |
|
|
| T |
9301768 |
aagcttctgtgttgatgtcaaatttagaagatcttccaaagatatatacaaatcttcaagcaagaagaggccatttgtaattgaatcagatgtggatgtt |
9301867 |
T |
|
| Q |
215 |
gatgtggcttcccatgtgttcat |
237 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
9301868 |
gatgtggcttcccatgtcttcat |
9301890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 31476747 - 31476587
Alignment:
| Q |
20 |
atggtgtcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggcct |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | | ||| |||| ||||||||||||||| ||| |||| |||||| ||||||| || ||| | | |
|
|
| T |
31476747 |
atggtgtcccttgtgatgccacatatatccaagattctcatagaactatccaacaactcttccacacatttttcaccttgatggtg---agaaatcactt |
31476651 |
T |
|
| Q |
120 |
tttgtgttgatgacatattgagaagatcttccaaagaaatatacaaatcttcaagaaatgaaag |
183 |
Q |
| |
|
||| ||||||| ||| |||||||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
31476650 |
gttgggttgatgccatgttgagaagatcttccattgacatatacaaatcttcaagcaaggaaag |
31476587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 31466889 - 31466751
Alignment:
| Q |
32 |
gtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggccttttgtgttgatg |
131 |
Q |
| |
|
||||||||||| |||||||||| | ||| ||||| |||||||| |||||| | |||||||||||| |||||| || ||| | | ||| ||||||| |
|
|
| T |
31466889 |
gtgatgccacaaatatccaaaattctcattgaactatccaacacctcttcaatgcatttctcacctctatggtg---agaaatcacttgttgggttgatg |
31466793 |
T |
|
| Q |
132 |
acatattgagaagatcttccaaagaaatatacaaatcttcaa |
173 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31466792 |
ccatgttgagaagatcttccaatgaaatatacaattcttcaa |
31466751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 31502105 - 31501972
Alignment:
| Q |
26 |
tcccttgtgatgccacagatatccaaaactttcactgaaccatccaacaactcttcgacaaatttctcacctcgatggtggtgagcaatggccttttgtg |
125 |
Q |
| |
|
||||| ||||||||||| |||||||||| | ||| ||||| |||||||| |||||| | |||||||||||| | ||||||| ||| | | ||| | |
|
|
| T |
31502105 |
tccctagtgatgccacaaatatccaaaattctcattgaactatccaacacctcttcaatgcatttctcacctcta---tggtgagaaatcacttgttggg |
31502009 |
T |
|
| Q |
126 |
ttgatgacatattgagaagatcttccaaagaaatata |
162 |
Q |
| |
|
|||||| ||| ||||||||||| ||||| |||||||| |
|
|
| T |
31502008 |
ttgatgccatgttgagaagatcatccaatgaaatata |
31501972 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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