View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_high_16 (Length: 233)
Name: NF2279_high_16
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 43576588 - 43576383
Alignment:
| Q |
15 |
atcaagaccttcaatgtctctactcatcaacctagagctccaattatcaaggaagtgatttggagtcctcctcttcaattttggattaagtgcaatattg |
114 |
Q |
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| T |
43576588 |
atcaagaccttcaatgtctctactcatcaacctagagttccaattatcaaggaagtgatttggagtcctcctcttcaattttggattaagtgcaatattg |
43576489 |
T |
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| Q |
115 |
atggagcttcaaatggaaatcctggcaactcagcttgtggtggaatatttagaaatcatgaagctgattttgtttgttgttttgctgagcctcttggcaa |
214 |
Q |
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| T |
43576488 |
atggagcttcaaatgaaaatcctggcaactcagcttgtggtggaatatttagaaatcatgaagctgattttgtttgttgttttgctgagcctcttggcaa |
43576389 |
T |
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| Q |
215 |
ctcttc |
220 |
Q |
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|||||| |
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| T |
43576388 |
ctcttc |
43576383 |
T |
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Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 32247520 - 32247359
Alignment:
| Q |
15 |
atcaagaccttcaatgtctctactcatcaacctagagctccaattatcaaggaagtgatttggagtcctcctcttcaattttggattaagtgcaatattg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32247520 |
atcaagaccttcaatgtctctactcatcaacctagagctccaattatcaaggaagtgatttggagtcctcctcttcaatcttggattaagtgcaatattg |
32247421 |
T |
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| Q |
115 |
atggagcttcaaatggaaatcctggcaactcagcttgtggtggaatatttagaaatcatgaa |
176 |
Q |
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| T |
32247420 |
atggagcttcaaatggaaatcctggcagctcagcttgtggtggaatatttagaaatcatgaa |
32247359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 21852563 - 21852377
Alignment:
| Q |
24 |
ttcaatgtctctactcatcaacctagagctccaattatcaaggaagtgatttggagtcctcctcttcaatt-ttggattaagtgcaatattgatggagct |
122 |
Q |
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|||||||| || || ||||| ||||||||||| | ||| || ||||| || |||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
21852563 |
ttcaatgtttccacccatcatcctagagctcctactattaaagaagttatctggagtccacctct-caattcttggattaagtgcaatattgatggagct |
21852465 |
T |
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| Q |
123 |
tcaaatggaaatcctggcaactcagcttgtggtggaatatttagaaatcatgaagctgattttgtttgttgttttgctgagcctcttg |
210 |
Q |
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| T |
21852464 |
tccattggaaatccaggaaacttaagttgtggaggcatttttaggaacaatgaagcagattttctttgctgctttactgaacctcttg |
21852377 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 10512882 - 10512802
Alignment:
| Q |
95 |
ttggattaagtgcaatattgatggagcttcaaatggaaatcctggcaactcagcttgtggtggaatatttagaaatcatga |
175 |
Q |
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||||||||| ||||| || | ||| ||||||||||| |||||||| ||||| | |||||||| || |||||| ||||||| |
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| T |
10512882 |
ttggattaaatgcaacatcggtggtgcttcaaatggtaatcctggaaactctgtatgtggtggtatttttagagatcatga |
10512802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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