View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_high_8 (Length: 334)
Name: NF2279_high_8
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_high_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 44926719 - 44927052
Alignment:
| Q |
1 |
tttcatcaatgtctctgcatccacaatctcttcatgttggtttggaaacggtgaaaagaacgtccgagctttgttttcactagcagcaaaggtttcccca |
100 |
Q |
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| T |
44926719 |
tttcatcaatgtctctgcatccacaatctcttcatgttggtttggaaacggtgaaaagaacgtccgagctttgttttcactagcagcaaaggtttcccca |
44926818 |
T |
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| Q |
101 |
actattattttcattgatgaagttgatagcttgcttgggaagcggtctaacaatgatgacaagacaatgacaaggattaaaaatgaattcatgtcccact |
200 |
Q |
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| T |
44926819 |
actattattttcattgatgaagttgatagcttgcttgggaagcggtctgacaatgatgacaagacaatgagaaggattaaaaatgaattcatgtcccact |
44926918 |
T |
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| Q |
201 |
gggatggactattgtcaaaacctgtcgaaaaagttactgttcttgctgcaaccaacatgccatttggccttggtgaagcaattataagacggttccagcg |
300 |
Q |
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| T |
44926919 |
gggatggactattgtcaaaacctgtcgagaaagttactgttcttgctgcaaccaacatgccatttggccttgatgaagcaattataagacgcttccagcg |
44927018 |
T |
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| Q |
301 |
caggtagaataaaatcacacatttctcatgaacc |
334 |
Q |
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| T |
44927019 |
caggtagaataaaatcacatatttctcatgaacc |
44927052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 52 - 309
Target Start/End: Original strand, 44935210 - 44935470
Alignment:
| Q |
52 |
tgaaaagaacgtccgagctttgttttcactagcagcaaaggtttccccaactattattttcattgatgaagttgatagcttgcttgggaagcggtctaac |
151 |
Q |
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| T |
44935210 |
tgaaaagaacgtccgagctctattttcgcttgcggcgaaggttgctccaactattattttcattgacgaagttgatagcatgcttgggcaacggtctagc |
44935309 |
T |
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| Q |
152 |
aatgatgacaaga---caatgacaaggattaaaaatgaattcatgtcccactgggatggactattgtcaaaacctgtcgaaaaagttactgttcttgctg |
248 |
Q |
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| T |
44935310 |
actcgtgagcacagctcaatgagaagggtcaaaaatgaattcatgtcccgttgggatggactattgtcaaaacctgatgagaaaattactgttcttgctg |
44935409 |
T |
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| Q |
249 |
caaccaacatgccatttggccttggtgaagcaattataagacggttccagcgcaggtagaa |
309 |
Q |
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| T |
44935410 |
caaccaacatgccatttgaccttgatgaagcaattatcagacggtttcagcgcaggtagaa |
44935470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 52 - 309
Target Start/End: Original strand, 45988596 - 45988856
Alignment:
| Q |
52 |
tgaaaagaacgtccgagctttgttttcactagcagcaaaggtttccccaactattattttcattgatgaagttgatagcttgcttgggaagcggtctaac |
151 |
Q |
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| T |
45988596 |
tgaaaagaacgtccgagctctgttttcactagcagcagaggttgccccaactattattttcatcgatgaagtggatagcatgcttgggcggcggtctagc |
45988695 |
T |
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| Q |
152 |
aatgatgacaaga---caatgacaaggattaaaaatgaattcatgtcccactgggatggactattgtcaaaacctgtcgaaaaagttactgttcttgctg |
248 |
Q |
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| T |
45988696 |
tcttatgaaaacaactcaataagaagggtgaaaaacgagttcatgtcacgttgggatggactattgtcaaaacctgatgagaaaattattgttcttgctg |
45988795 |
T |
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| Q |
249 |
caaccaacatgccatttggccttggtgaagcaattataagacggttccagcgcaggtagaa |
309 |
Q |
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| T |
45988796 |
ccaccaacatgccatttgaccttgatgaagcagttataagacggtttcagcgaaggtagaa |
45988856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 45993622 - 45993752
Alignment:
| Q |
179 |
aaaaatgaattcatgtcccactgggatggactattgtcaaaacctgtcgaaaaagttactgttcttgctgcaaccaacatgccatttggccttggtgaag |
278 |
Q |
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| T |
45993622 |
aaaaatgaattcatgtcacgatgggatggactattgtcaaaaccggatgagaaaattattattcttgctgctacgaacatgccatttgaccttgatgaag |
45993721 |
T |
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| Q |
279 |
caattataagacggttccagcgcaggtagaa |
309 |
Q |
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| T |
45993722 |
cagttataagacggtttcagcgaaggtagaa |
45993752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 11094477 - 11094346
Alignment:
| Q |
175 |
gattaaaaatgaattcatgtcccactgggatggactattgtcaaaacctgtcgaaaaagttactgttcttgctgcaaccaacatgccatttggccttggt |
274 |
Q |
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||||||||||||||||||| | || |||||||||||| | ||| |||| ||| || || |||||||||||| ||||||| ||||||| |||| | |
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| T |
11094477 |
gattaaaaatgaattcatgacacattgggatggactactatcaggacctaatgaacaaattcttgttcttgctgctaccaacagaccatttgatcttgat |
11094378 |
T |
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| Q |
275 |
gaagcaattataagacggttccagcgcaggta |
306 |
Q |
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| T |
11094377 |
gaagcaattatacgacggtttgagcgcaggta |
11094346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 11094603 - 11094520
Alignment:
| Q |
52 |
tgaaaagaacgtccgagctttgttttcactagcagcaaaggtttccccaactattattttcattgatgaagttgatagcttgct |
135 |
Q |
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| T |
11094603 |
tgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatgct |
11094520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 37554240 - 37554317
Alignment:
| Q |
51 |
gtgaaaagaacgtccgagctttgttttcactagcagcaaaggtttccccaactattattttcattgatgaagttgata |
128 |
Q |
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||||||||||||| |||||| |||||| | |||| ||||| | ||||||| |||||||| |||| ||||||||||| |
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| T |
37554240 |
gtgaaaagaacgttcgagctctgtttttattagcgacaaagttggccccaacaattatttttattgttgaagttgata |
37554317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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