View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_1 (Length: 604)
Name: NF2279_low_1
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Original strand, 1937779 - 1938363
Alignment:
| Q |
16 |
aaaaacacttaaatagcctagaaaagcaagggaaacaagaatagcaaaggaatggacttataatccttggaatactgataaacacaatttccttaggtct |
115 |
Q |
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| T |
1937779 |
aaaaacacttaaatagcctagaaaagcaagggaaacaagaatagcaaaggaatggacttataatccttggaatactgataaacacaatttccttaggtct |
1937878 |
T |
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| Q |
116 |
ttcaccaaatcattaattgtcatgctatactcgtctttcatttgcattttaagtgtaacattttataattcattcaatgcaatactaataattgtttaga |
215 |
Q |
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| T |
1937879 |
ttcaccaaatcattaattgtcatgctatactcgtctttcatttgcattttaagtgtaacattttataattcattcaatgcaatactaataattgtttaga |
1937978 |
T |
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| Q |
216 |
taaggaaatgtgcaatctctttaaaattattaaattaattgtttgtaacataagaactctataattgcatgcattttatacctcagcaataattgtgata |
315 |
Q |
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| T |
1937979 |
taaggaaatgtgcaatctctttaaaattattaaattaattgtttgtaacataagaactctataattgcatgcattttatacctcagcaataattgtgata |
1938078 |
T |
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| Q |
316 |
tgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattatcatttt |
415 |
Q |
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| T |
1938079 |
tgaagtgtggaatcaccaaatgggaaaatggtagtacttgttatagatagatgaaggtttgtaaccaagtttagtattttgtgcacaatattatcatttt |
1938178 |
T |
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| Q |
416 |
gcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtgactttaggtaatactatttcatcactgaatctataactagccaag |
515 |
Q |
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| T |
1938179 |
gcttcttctcacattggattcaatcatcacactgttttctgagactcttagtgtgactttaggtaatactatttcatcactgaatctataactagccaag |
1938278 |
T |
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| Q |
516 |
tttgatccacaagtggtcgagtcatgtagtttcttttttaccattgttgaatatgcaatagttatgttttccttttgaatttcta |
600 |
Q |
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| T |
1938279 |
tttgatccacaagtggtcgagtcatgtagtttcttttttaccattgttgaatatgcaatagttatgttttccttttgaatttcta |
1938363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 476 - 600
Target Start/End: Original strand, 23751867 - 23751992
Alignment:
| Q |
476 |
aggtaatactatttcatcactgaatctataactagccaagtttgatccacaagtggtc-gagtcatgtagtttcttttttaccattgttgaatatgcaat |
574 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23751867 |
aggtagtactatttcatcactgaatctataactagccaagtttgattcacaagtggtctgagtcgtgtagtttcttttttaccattgttgaatatgcaat |
23751966 |
T |
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| Q |
575 |
agttatgttttccttttgaatttcta |
600 |
Q |
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| T |
23751967 |
agttatgttttcattttgaatttcta |
23751992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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