View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2279_low_11 (Length: 287)

Name: NF2279_low_11
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2279_low_11
NF2279_low_11
[»] chr8 (4 HSPs)
chr8 (172-271)||(1938610-1938709)
chr8 (9-89)||(1938447-1938527)
chr8 (172-237)||(23752221-23752286)
chr8 (33-89)||(23752082-23752138)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 1938610 - 1938709
Alignment:
Q  172 ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1938610 ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatacttacaagcattgtcgtgatttagaagtattatct 1938709  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 1938447 - 1938527
Alignment:
Q  9 gagatgaattaatagcagacaataattcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac 89  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1938447 gagatgtattaatagcagacaataattcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac 1938527  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 23752221 - 23752286
Alignment:
Q  172 ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccaggtcaacatac 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  23752221 ctactatatgtttaaagaaagaaaataaataaatttttggttcaaatcaaagccagtccaacatac 23752286  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 23752082 - 23752138
Alignment:
Q  33 attcaagacacaaaatttagggtttaaaataccaactaagtacaaatatttaacaac 89  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||    
T  23752082 attcaagacacaaagtttagggtttaaaataccaactatgtacaaatatgtaacaac 23752138  T

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