View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_12 (Length: 273)
Name: NF2279_low_12
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 40497900 - 40497628
Alignment:
| Q |
1 |
ataaagctatgagaaccaacccttgttcttcctgcacaacaaactaagaagggactctactttctttctaaccttgaccaaaatatagcatatccagttc |
100 |
Q |
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| T |
40497900 |
ataaagctaggagaaccaacacttgttcttcctgcacaacaaactaagaagggactctactttctttctaaccttgaccaaaatatagcatatccagttc |
40497801 |
T |
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| Q |
101 |
gtacaatttactgttataaatcactttcaaaaggcaatgaggatgttgcacaagttcttaaggattcattgtcaaagattcttgttcactactatcccat |
200 |
Q |
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| T |
40497800 |
gtacaatttactgttataaatcactttcaaaaggcaatgaggatgttgcacaagttcttaaggattcattgtcaaagattcttgttcactactatcccat |
40497701 |
T |
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| Q |
201 |
ggctggaaggttgaaaataagctcagaaggaaagttgacaatagactgcaatgaagagggtgttgtatttgtt |
273 |
Q |
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| T |
40497700 |
ggctggaaggttgaaaataagctcagaaggaaagttgacaatagactgcaatgaagagggtgttgtatttgtt |
40497628 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 45353232 - 45353043
Alignment:
| Q |
49 |
aagggactctactttctttctaaccttgaccaaaatatagcatatccagttcgtacaatttactgttataaatcactttcaaaaggcaatgaggatgttg |
148 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||| |||| | || |||||||| || | ||||||| || | ||| ||||| || | || |
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| T |
45353232 |
aagggactctactttctttcaaaccttgaccaaaatattgcagttccaatgcgcacaatttattgctttaaatcagaatctagaggaaatgaagaagctg |
45353133 |
T |
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| Q |
149 |
cacaagttcttaaggattcattgtcaaagattcttgttcactactatcccatggctggaaggttgaaaataagctcagaaggaaagttga |
238 |
Q |
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| T |
45353132 |
cacatgtgatcaaggatgctttgtcaaagattcttgtcccttattaccctatggcaggaaagttgattataagcacagaagggaagttga |
45353043 |
T |
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