View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_13 (Length: 260)
Name: NF2279_low_13
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5113479 - 5113722
Alignment:
| Q |
1 |
gctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcctcctaaacaacacaagatgtataatctgaagaag |
100 |
Q |
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| T |
5113479 |
gctgtataagaaggttaatgatgccattcgtgtagatccttctataaagaaatcacagaagcatcctcctaaacaacacaagatgtataatctgaagaag |
5113578 |
T |
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| Q |
101 |
cttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgatgaggatgacgacgagctagaacagtcttg |
200 |
Q |
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| T |
5113579 |
cttacctatgaggagcggaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgatgaggatgacgacgagctagaagagtcttg |
5113678 |
T |
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| Q |
201 |
tttgtgtctaggctacttttgaagaagtttgtcatccaatggac |
244 |
Q |
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| T |
5113679 |
tttgtgtctaggctacttttgaagaagtttgtcatccaatggac |
5113722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 10463713 - 10463668
Alignment:
| Q |
85 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
130 |
Q |
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| T |
10463713 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
10463668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 10463893 - 10463810
Alignment:
| Q |
5 |
tacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcctcctaaacaacacaagatgtat |
88 |
Q |
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| T |
10463893 |
tacaagaaggttcatgctgcaattcgtgcagatcctacaatcaagaaatccgagaagcagcctccaaaacaacacaagaggtat |
10463810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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