View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2279_low_14 (Length: 257)
Name: NF2279_low_14
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 16585709 - 16585456
Alignment:
| Q |
1 |
gcacataaatcaacagacacatttatagaaatttctttttccactgatatattttcgtaaacattttctcaaaatagtccaaaatattaagttaaaatat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16585709 |
gcacataaatcaacatacacatttatagaaatttctttttccactgatatattttcgtaaacattttctcaaaatagtccaaaatattaagttaaaatat |
16585610 |
T |
|
| Q |
101 |
ttttgacaannnnnnnacatagaatcatacgtttatacaacatttaccaggaactagggtcagtcaacctccacagatttgcagacaaatttgatttaaa |
200 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16585609 |
gtttgacaatttttttacatagaatgatacgtttatacaacatttaccaggaaccagggtcagtcaacctccacagatttgcagacaaatttgatttaaa |
16585510 |
T |
|
| Q |
201 |
atca--------attaggtactcacaacagccaacaaaaatttccgccattcat |
246 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16585509 |
atcaattagtacattaggtactcacaacagccaacaaaaatttccgacattcat |
16585456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University