View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_17 (Length: 247)
Name: NF2279_low_17
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 230
Target Start/End: Complemental strand, 35228922 - 35228729
Alignment:
| Q |
37 |
tccaagttccacctctattcttcgtaagcgaagagcaaaaaatgacagcctttgaagaattaccggaagggtgcatcgcggctgtactctccagtacaac |
136 |
Q |
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| T |
35228922 |
tccaagtgccacctctattcttcgtaagcgaggagcaaaaaatgacagcctttgaagaattaccggaagggtgcatcgcggctgtactctccagtacaac |
35228823 |
T |
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| Q |
137 |
tccagtcgatgcctgcagactctccttcatttccaagaattttctttctgcgtccgattccgacgctgtatggaatcgctttctcccttctgat |
230 |
Q |
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| T |
35228822 |
tccagtcgacgcctgcagactctccttcatttccaagaattttctttctgcgtccgattccgacgctgtatggaatcgctttctcccttctgat |
35228729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 35265734 - 35265635
Alignment:
| Q |
130 |
gtacaactccagtcgatgcctgcagactctccttcatttccaagaattttctttctgcgtccgattccgacgctgtatggaatcgctttctcccttctga |
229 |
Q |
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| T |
35265734 |
gtacaactccagttgacgccggcagactctccgtcgtttcaaagactttccgatcagcctccgattccgacgctgtctggaatcaatttctaccttctga |
35265635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 35273294 - 35273164
Alignment:
| Q |
99 |
ccggaagggtgcatcgcggctgtactctccagtacaactccagtcgatgcctgcagactctccttcatttccaagaattttctttctgcgtccgattccg |
198 |
Q |
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| T |
35273294 |
ccggaaggatgcatcgccgccatagtctctcgtacaactccactcgacgccggcagactctcggtcttttctaagactttccgatcagcctccgattccg |
35273195 |
T |
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| Q |
199 |
acgctgtatggaatcgctttctcccttctga |
229 |
Q |
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| T |
35273194 |
atgctgtatggaatcaatttctaccttctga |
35273164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 35477385 - 35477241
Alignment:
| Q |
87 |
tttgaagaattaccggaagggtgcatcgcggctgtactctccagtacaactccagtcgatgcctgcagactctccttcatttccaagaattttctttctg |
186 |
Q |
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| T |
35477385 |
tttgaagaattaccggaagggtgcattgccgccatactatcttgtaccactccagctgacgccggcagattctccgtcgtttccaagacattccgttgtg |
35477286 |
T |
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| Q |
187 |
cgtccgattccgacgctgtatggaatcgctttctcccttctgatt |
231 |
Q |
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| T |
35477285 |
ccgctgattcggacgccgtatggaatcactttctccgttatgatt |
35477241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 35203669 - 35203511
Alignment:
| Q |
73 |
aaaaaatgacagcctttgaagaattaccggaagggtgcatcgcggctgtactctccagtacaactccagtcgatgcctgcagactctccttcatttccaa |
172 |
Q |
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| T |
35203669 |
aaaaaatgacagagtttgaggaattgccggaaggatgcatttccgccattctctctcgcacaactccggctgacgccggcagactctccgttgtttccaa |
35203570 |
T |
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| Q |
173 |
gaattttctttctgcgtccgattccgacgctgtatggaatcgctttctcccttctgatt |
231 |
Q |
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| T |
35203569 |
gacaattctttctgccgccgattccgacgccgtctggaatcaatttctcccttccgatt |
35203511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 45527187 - 45527091
Alignment:
| Q |
130 |
gtacaactccagtcgatgcctgcagactctccttcatttccaagaattttctttctgcgtccgattccgacgctgtatggaatcgctttctcccttc |
226 |
Q |
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| T |
45527187 |
gtacgactcctgttgacgccggcagactctccgtcgtttcgaagactttcctttctgccgccgattccgatgccgtctggaatcactttcttccttc |
45527091 |
T |
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