View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_2 (Length: 545)
Name: NF2279_low_2
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_2 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 17522677 - 17523131
Alignment:
| Q |
19 |
atgaagtagctgttctcggaaatagggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
118 |
Q |
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| T |
17522677 |
atgaagtagctgttgtcggaaatagggttgctgaaaataaagtttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
17522776 |
T |
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| Q |
119 |
tttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatg |
218 |
Q |
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| T |
17522777 |
tttggtcattcagcccatgtcaactatatctagcatcacactgctcaacaagtttaatgtgaaagagattggtactctgcaagaaaaagtggttgagatg |
17522876 |
T |
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| Q |
219 |
gggatggatgaggttagtatatattcaatgtgtaaataaacttagtcttgtctaaaatttctgatttgtatttttagatttatatgcnnnnnnnngtgct |
318 |
Q |
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| T |
17522877 |
gggatggatgaggttagtgtatatacaatgtgtaaacaaactcagtcatgtctaaaatttctgatttgttcttttagatttatatg-tttcttttgtgct |
17522975 |
T |
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| Q |
319 |
attttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| | |
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| T |
17522976 |
tttttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgacaagtgtttttctcaagaagcgaaattgataagagaggaaga |
17523075 |
T |
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| Q |
419 |
acaagacagatcttttaa-----cttcaacatgttaagaagataaaataatgggga |
469 |
Q |
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| T |
17523076 |
acaagacggatcttttaattcatcttcaaaatgttaagaagataaaataatgggga |
17523131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 17016515 - 17016382
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
17016515 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17016416 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttga |
214 |
Q |
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| T |
17016415 |
aagagatgggtaccttacaagaaatggtagttga |
17016382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 17546952 - 17546819
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
17546952 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17546853 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttga |
214 |
Q |
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| T |
17546852 |
aagagatgggtaccttacaagaaatggtagttga |
17546819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 17016236 - 17016177
Alignment:
| Q |
337 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
396 |
Q |
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| T |
17016236 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17016177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 17546673 - 17546614
Alignment:
| Q |
337 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
396 |
Q |
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| T |
17546673 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17546614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 52145088 - 52144989
Alignment:
| Q |
320 |
ttttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaataa |
419 |
Q |
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| T |
52145088 |
ttttgtaacagggtatcaagttgctaaaggcttctctgcaatccaaaatggtattgacaagtgttttcctcaagaaggaaaattgatatgcaaggaataa |
52144989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 52145346 - 52145250
Alignment:
| Q |
44 |
ggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtca |
140 |
Q |
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| T |
52145346 |
ggttgctaaaaagagagtttccaatattaagagtgggtttgtgaaagatattataatttttatggtgatggatgatttagtgattcagcccatgtca |
52145250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 52133470 - 52133319
Alignment:
| Q |
81 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
180 |
Q |
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| T |
52133470 |
tttgtgaaagatgttgtgacatttatggtgatggatgatttagtcgttcagccaatgtcaacaatatcaagcattactttgctgaacaaattcaatatca |
52133371 |
T |
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| Q |
181 |
aagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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| T |
52133370 |
aggaggttggtgcgttgcaggaaaaggttgttgagatgggaatggatgaggt |
52133319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 52145241 - 52145174
Alignment:
| Q |
165 |
aacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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| T |
52145241 |
aacaaattcaaagtgaaagagattgaaaccttgcaagaaaaggttgttgagatgggaatagatgaggt |
52145174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 8693 - 8529
Alignment:
| Q |
68 |
tattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaac |
167 |
Q |
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||||||| ||| |||||||||||||| | || || ||||| ||||| ||||| ||| ||||||| |||||||||||||| ||||| || |||| ||| |
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| T |
8693 |
tattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgatttagtggttcagccaatgtcaaccatatcaagcattactttgctgaac |
8594 |
T |
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| Q |
168 |
aagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
232 |
Q |
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|| |||||| | || ||| | ||||||||||| |||| ||| ||||||||||| ||||||||||| |
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| T |
8593 |
aaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggt |
8529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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