View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_5 (Length: 411)
Name: NF2279_low_5
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 35229308 - 35228916
Alignment:
| Q |
16 |
atgagagatcataagagatgtataattttaaaagaagtttaacataaaaggaaaatcaaatgtaatttatttgagtttgtttagtggtggtggcttggat |
115 |
Q |
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| T |
35229308 |
atgagagatcataagagatgtataattttaaaagaagtttaacataaaaggaaaatcaaatgtaatttatttgagtttgtttagtgatgttggcttggat |
35229209 |
T |
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| Q |
116 |
tcttcaaggatgacccatattgagctatgatattactttaaatggatgtaagattgaaacattgattaatcggttcttagatcgaatataagttaagaaa |
215 |
Q |
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| T |
35229208 |
tcttcaaggatgacccatactgagctatgatattactttaaatggatgtaagattgaaacattgattaatcggttcttaggtcgaatataagttaagaaa |
35229109 |
T |
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| Q |
216 |
agataactacttaatttaagcatttatgtggtgtttgagtgtaatttactcctaacnnnnnnngtccattggctttacataatttcattttagtttggtt |
315 |
Q |
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| T |
35229108 |
agataactacttaatttaagcatttatgtggtgtttgagtgtaatttactcctaacaaaaaaagtccattggctttacataatttaattttagtttggtt |
35229009 |
T |
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| Q |
316 |
tgaaaggataatttaattttagttgactatatagtctttttatttgtttattactaggtgtttatttatcgtaaaaataactaaaaatccaagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
35229008 |
tgaaaggataatttaattttagttgactatatagtc-ttttatttatttatgactaggtgtttatttatcgaaaaaataaataaaaatccaagt |
35228916 |
T |
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