View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2279_low_7 (Length: 355)
Name: NF2279_low_7
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 3923830 - 3923503
Alignment:
| Q |
18 |
tatatatgtcaccttcccttaggtatgtaaaggtcactgtgattcaagcagacgatttgttactacaatttcctcctgagagttcggaattgtttgtcca |
117 |
Q |
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| T |
3923830 |
tatatatgtcaccttcccttaggtatgtaaaggtcactgtgattcaagcacaccatttgttactacaatttcctcctgagagttcggaattgtttgtcca |
3923731 |
T |
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| Q |
118 |
agttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttggaatgaggatttgatgtttgttacacaagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923730 |
agttggtttagggaagagtttttgtttgagaactagtttttctaaggaaaagagcgcgaaaccgttttggaatgaggatttgatgtttgttacacaagag |
3923631 |
T |
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| Q |
218 |
cctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataattcga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3923630 |
cctttcgatgaagaacttgtcttgagcgttgagcaagtaagattagctgatcatgtgaatgtgagtttgggtacatatacaactaatttgaataattcga |
3923531 |
T |
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| Q |
318 |
acgatgtggatttaagatttgatgatgt |
345 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
3923530 |
acgatgtggatataagatttgatgatgt |
3923503 |
T |
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