View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2279_low_8 (Length: 345)
Name: NF2279_low_8
Description: NF2279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2279_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 72 - 326
Target Start/End: Original strand, 5734872 - 5735132
Alignment:
| Q |
72 |
catccaataaaataatgactatcaca--tcttagaatgagaatatgttgatttggtttatgagtatgacatgtccttgcaaaacaggtggtgattaatga |
169 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5734872 |
catccaataaaatactgactatcacacatattagaatgagaatatgttgatttggtttatgagtatgacatgtccttgcaaaacaggtggtgattaatga |
5734971 |
T |
|
| Q |
170 |
ttataccttggttttcctcaaaagaaaa----atgattataccttggttgatttagatgtgcatccttacgctaacatgcaaacaaaacattatcttaaa |
265 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5734972 |
ttataccttggttttcctcaaaaaaaaaaaaaatgattataccttggttgatttagatgtgcatccttacgctaacatgcaaacaaaacattatcttaaa |
5735071 |
T |
|
| Q |
266 |
tattgaataaatttttactattgtaccttcgaaaagggaaagaaaaagataggctaccggt |
326 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5735072 |
tattgaataaatatttattattgtaccttcgaaaagggaaagaaaaagataggctaccggt |
5735132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 5716551 - 5716631
Alignment:
| Q |
82 |
aataatgactatcacatcttagaatgagaatatgttgatttggtttatgagtatgacatgtccttgcaaaacaggtggtgatt |
164 |
Q |
| |
|
|||||||| ||| ||||||||||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5716551 |
aataatgagtatgacatcttagaaagagagt--gttaatttggtttatgagtatgacatgtacttgcaaaacaggtggtgatt |
5716631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 5683072 - 5683150
Alignment:
| Q |
84 |
taatgactatcacatcttagaatgagaatatgttgatttggtttatgagtatgacatgtccttgcaaaacaggtggtgatt |
164 |
Q |
| |
|
|||||| ||| ||||||||||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5683072 |
taatgagtatgacatcttagaaagagagt--gttaatttggtttatgagtatgacatgtacttgcaaaacaggtggtgatt |
5683150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 5716773 - 5716805
Alignment:
| Q |
286 |
ttgtaccttcgaaaagggaaagaaaaagatagg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5716773 |
ttgtaccttcgaaaagggaaagaaaaagatagg |
5716805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 5683289 - 5683318
Alignment:
| Q |
289 |
taccttcgaaaagggaaagaaaaagatagg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5683289 |
taccttcgaaaagggaaagaaaaagatagg |
5683318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University