View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2280_high_3 (Length: 351)
Name: NF2280_high_3
Description: NF2280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2280_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 28530827 - 28530507
Alignment:
| Q |
18 |
gatactccccttgatctcaactataagcaaaaacgtcaaacaaagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatt |
117 |
Q |
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| T |
28530827 |
gatactccccttgatctcaactataagcaaaaacgtcaaacaaagtagatgtatctgattcaaatttttaaccatacattaattttgcttgacttatatt |
28530728 |
T |
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| Q |
118 |
tgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccagga |
217 |
Q |
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| T |
28530727 |
tgcttatatttaagaccggagtagtaattatgtgaattaagaaacgtagtatttgattaattcccttctttattttgtaaatgctaattccttaccagga |
28530628 |
T |
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| Q |
218 |
ttgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattct |
317 |
Q |
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| T |
28530627 |
ttgaaattgtcggttgcagcaacaagatcttcataactaaagtttctccaagaaggctttgtaataccatcaagatcaaaagcagcatcaaaaatattct |
28530528 |
T |
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| Q |
318 |
catcttcatcgttagctgttc |
338 |
Q |
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| T |
28530527 |
catcttcatcgttagctgttc |
28530507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 32522549 - 32522516
Alignment:
| Q |
52 |
gtcaaacaaagtagatgtatctgattcaaatttt |
85 |
Q |
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| T |
32522549 |
gtcaaacaaagttgatgtatctgattcaaatttt |
32522516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 32332551 - 32332591
Alignment:
| Q |
106 |
ttgacttatatttgcttatatttaagaccggagtagtaatt |
146 |
Q |
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| T |
32332551 |
ttgacttatttttgtttatatttgagaccggagtagtaatt |
32332591 |
T |
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