View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2280_low_1 (Length: 501)
Name: NF2280_low_1
Description: NF2280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2280_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 1331477 - 1331175
Alignment:
| Q |
17 |
tcattaatagcgatagtttgtttcatcattagtaacaacatttgcatcataggtcacaccaattgcatcaacattaacgtcattagtaccatcatgagtc |
116 |
Q |
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| T |
1331477 |
tcattaatagcgatagttt----catcattagtaacaacatttgcatcataggtcacaccaattgcatcaacattaacgtcatcagtaccatcatgagtc |
1331382 |
T |
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| Q |
117 |
gcgtcatttgcatcaacaatgtcgtcatcatcaacaaaattttcaacatgagtaataacaagtgttgcacccgcgcttcaaaagccttggaggatgctat |
216 |
Q |
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| T |
1331381 |
gcgtcatttgcatcaacaatgtcgtcattatcaacaaaattttcaacatgagtaataacaagtg--------gcacttcaaaagccttggaggatgctat |
1331290 |
T |
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| Q |
217 |
gccgtatgtattctccttgtcaacatatttatgaattgttttctttgaaacatatgcggg--nnnnnnnaccacgatctacattttccacaaccttccga |
314 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||| ||||||| |
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| T |
1331289 |
gccgtatgcattctccttgtcaacatatttatgaattgttttcttcgaaacatatgcaggtttttttttaccatgatctacattttccacaatcttccga |
1331190 |
T |
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| Q |
315 |
gggattaaccaacga |
329 |
Q |
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| T |
1331189 |
gggatcaaccaacga |
1331175 |
T |
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