View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2280_low_3 (Length: 383)
Name: NF2280_low_3
Description: NF2280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2280_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 5777275 - 5777331
Alignment:
| Q |
311 |
catcgtccatgttcctccgggagaagagtaatgttccattgctctatccttacacct |
367 |
Q |
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| T |
5777275 |
catcgtccatgttcctccgggagaagagtaatgttccattgctctatccttacacct |
5777331 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 5776976 - 5777025
Alignment:
| Q |
18 |
taacatgcatttaagagatgaaagtgagaagcgagtgattgatgaagatt |
67 |
Q |
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| T |
5776976 |
taacatacatttaagagatgaaagtgagaagcgagtgattgatgaagatt |
5777025 |
T |
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