View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_11 (Length: 411)
Name: NF2281_high_11
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 5 - 397
Target Start/End: Complemental strand, 33768229 - 33767837
Alignment:
| Q |
5 |
gctagattattctcaaacccggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatacta |
104 |
Q |
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| T |
33768229 |
gctagcttcttcgcaaactcggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccggcaatctatagggatacta |
33768130 |
T |
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| Q |
105 |
ctgtgaaagaagtgttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattcagaataagattggagcagt |
204 |
Q |
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| T |
33768129 |
ctgtgaaagaagtgttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattcagaataagattggagcagt |
33768030 |
T |
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| Q |
205 |
atcaattgttgtggtgttgttggattttattatggttaacttctacttcaactatgattttcagtatgtagggaataaattgtacacacactatcaagca |
304 |
Q |
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| T |
33768029 |
atcaattgttgtggtgttgttggattttattatggttaacttctacttcaactatgattttcagtatgtagggaataaattgtacacacactatcaagca |
33767930 |
T |
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| Q |
305 |
atgtagcaccgacacttcatattaaaagtgtacctgcggttacatttaataactttcattttcttatcggcgtctacatgtcagtgctatatg |
397 |
Q |
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| T |
33767929 |
atgtagcaccgacacttcatattaaaagtgtacctgtggttacatttaataactttcattttcttatcggcgtctacatgtcagtgctatatg |
33767837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 33761610 - 33761464
Alignment:
| Q |
29 |
gaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacatt |
128 |
Q |
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| T |
33761610 |
gaggttacatccaaggttgttgctccaataaaggaattgctatcagaagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacatt |
33761511 |
T |
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| Q |
129 |
attttacaaaaggccttgatgggaactcttccttgcaccctttcagg |
175 |
Q |
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| T |
33761510 |
attttacaaaaggccttgatggtaactcttccttgcaccctttcagg |
33761464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 33771005 - 33770857
Alignment:
| Q |
36 |
catccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacattattttac |
135 |
Q |
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| T |
33771005 |
catccaaggttgttggtccaataaatgaattgttatcagaagaaaatccaccaatctatagggacactactgtgaatgatttcttggcacattattatga |
33770906 |
T |
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| Q |
136 |
aaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaatt |
184 |
Q |
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| T |
33770905 |
aaaatctcttgatgggagctcttccttgcagcctttcagagtgtgaatt |
33770857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 49463192 - 49463125
Alignment:
| Q |
119 |
ttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
186 |
Q |
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| T |
49463192 |
ttggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtgaattca |
49463125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 41242344 - 41242410
Alignment:
| Q |
49 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
115 |
Q |
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| T |
41242344 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
41242410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28130725 - 28130791
Alignment:
| Q |
49 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
115 |
Q |
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| T |
28130725 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
28130791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 19892129 - 19892189
Alignment:
| Q |
126 |
attattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
186 |
Q |
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| T |
19892129 |
attattatgcaaaaggcctagatggaaactcttccttggagcccttcaagttgtgaattca |
19892189 |
T |
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