View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_14 (Length: 393)
Name: NF2281_high_14
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 35073032 - 35073395
Alignment:
| Q |
18 |
catccaaattttattttctctaaaatttaatcaaccgttctagatgtagttctagtttctagaaacaaaaataggtaatgactgcataacaacctacaag |
117 |
Q |
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| T |
35073032 |
catccaaattttattttctctaaaatttaatcaaccgttctagatgtagttcttgtttctagaaacaaaaataggtaatgactgcataacaacctacaag |
35073131 |
T |
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| Q |
118 |
cgtacacgtgtcatatagaactaaaaccttgtttgatctccacgtgtcaatatcataacacgtgatacgtgttaacgaagcaagcatgaaaataaacatt |
217 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073132 |
cgtacacgtgtcatatagaa-ttaaaccttgtttgatctccacgtgtcaatatcataacacgtgatacgtgttaacgaagcaagcatgaaaataaacatt |
35073230 |
T |
|
| Q |
218 |
cataatttcacacaccacctnnnnnnnnnnnnnnntaaccttttttctaatctcttctgtttagatttgagtttgagcgccgaaggagacgatttattta |
317 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073231 |
cataatttcatacaccacctacaaaaaaataaaaataaccttttttctaatctcttctgtttagatttgagtttgagcgccgaaggagacgatttattta |
35073330 |
T |
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| Q |
318 |
agctcacacacaccaaacttcaccaagataagtatattaccttacccaattggttactgtttcat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35073331 |
agctcacacacaccaaacttcaccaagataagtatattaccttaccgaattggttactgtttcat |
35073395 |
T |
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