View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_15 (Length: 389)
Name: NF2281_high_15
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 6499920 - 6500293
Alignment:
| Q |
1 |
aacttcatactgaggaccaggttgactacctgcagcctatttaatcatagaatcacctttcacagctctacttgttaaattatttaacaaagtagtaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6499920 |
aacttcatactgaggaccaggttgactacctgcagcatatttaatcatagaatcacctttcacagctctacttgttaaattatttaacaaagtagtaaca |
6500019 |
T |
|
| Q |
101 |
acttcattagacaaatcaacatcacttgaattattttcattatttgaagaaaacataggaacatcttccattactcctaatatcaatcggtccgaataac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6500020 |
acttcattagacaaatcaacatcacttgaattattttcattttttgaagaaaacataggaacatcttccattactcctaatatcaatcggtccgaataac |
6500119 |
T |
|
| Q |
201 |
gtaacatgcatttttcgtcttctgaccaaaaaatagcctcttttcgatttggacaattacgtgtgagatttgttctggcgctgctgaggcaactgcggca |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6500120 |
gtaacatgcatttttcatcttctgaccaaaaaatagcctcttttcgatttggacaattacgtgtgagatttgttctggcgctactgaggcaactgcggca |
6500219 |
T |
|
| Q |
301 |
actattcggcataatatcccctcggcatagtccgattgcgtagactttgtcgctgttttcgccatgtgaaaaat |
374 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6500220 |
actatttggcataatatcccctcggcatagtccgatcgcgtagactttgtcgctgttttcgccatgtgaaaaat |
6500293 |
T |
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