View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_19 (Length: 328)
Name: NF2281_high_19
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 328
Target Start/End: Original strand, 13038502 - 13038813
Alignment:
| Q |
17 |
ggtatagaggcctattttcacgctcaatttttggttgtcgaaattggtagtggaaagggaaagagatctgcgttgcattttacttatgcattcaaaccac |
116 |
Q |
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| T |
13038502 |
ggtatagaggcttattttcacgctcaatttttggttgtcgaaattggtagtggaaagggaaagagatctgcgttgcattttacttatgcattcaaaccac |
13038601 |
T |
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| Q |
117 |
agtgttggtacttcattggtcttgagcatataggaaaccatggagctatggggaaagcagaaaatgaagttaggttatatgtagatggatctctatatga |
216 |
Q |
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| T |
13038602 |
agtgttggtacttcattggtcttgagcatataggaaaccatggagctatggggaaagcagaaaatgaagttaggttatatgtagatggatctctatatga |
13038701 |
T |
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| Q |
217 |
aagtcgtccttttgagttccctaaaatttccaaacccctttcattttgctgcataggaactaaccctcctcccactatggctggtttgcaacggcgtcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13038702 |
aagtcgtccttttgagttccctaaaatttccaaacccctttcattttgctgcataggaactaaccctcctcccactatggctggtttgcaacggcgtcgt |
13038801 |
T |
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| Q |
317 |
cgtcagtgccct |
328 |
Q |
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| T |
13038802 |
cgtcagtgccct |
13038813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 28378071 - 28377764
Alignment:
| Q |
17 |
ggtatagaggcctattttcacgctcaatttttggttgtcgaaattggtagtggaaagggaaagagatctgcgttgcattttacttatgcattcaaaccac |
116 |
Q |
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| T |
28378071 |
ggtatagaggcttattttcatgcccaatttttggttgttgaaactgccagtggaaagggaaaaaagtcatctttgcattttacctatgccttcaaaccac |
28377972 |
T |
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| Q |
117 |
agtgttggtacttcattggtcttgagcatataggaaaccatggagctatggggaaagcagaaaatgaagttaggttatatgtagatggatctctatatga |
216 |
Q |
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| T |
28377971 |
aatgctggtacttcattgggcttgagcatataggcaagcatggaattcttgggaatacagaaagtgaagtcaggttatatgtggatgggtctttatatga |
28377872 |
T |
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| Q |
217 |
aagtcgtccttttgagttccctaaaatttccaaacccctttcattttgctgcataggaactaaccctcctcccactatggctggtttgcaacggcgtcgt |
316 |
Q |
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|||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
28377871 |
aagtcgtccttttgagttccctcgaatatccaaacccctcgcgttttgctgcataggaactaacccacctcctactatggctggtttgcaacgccgtcgt |
28377772 |
T |
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| Q |
317 |
cgtcagtg |
324 |
Q |
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| T |
28377771 |
cgtcagtg |
28377764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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