View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_high_2 (Length: 636)

Name: NF2281_high_2
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_high_2
NF2281_high_2
[»] chr5 (2 HSPs)
chr5 (1-636)||(41255787-41256422)
chr5 (1-122)||(41256510-41256631)


Alignment Details
Target: chr5 (Bit Score: 612; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 636
Target Start/End: Complemental strand, 41256422 - 41255787
Alignment:
Q  1 ttgaactctatctgacaaagcactaatctgatacaggtcaggcagttcattattagtagcagcagtagcagaataagcagcaagctcaccaacattcaat 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41256422 ttgaactctatctgacaaagcaataatctgatacaggtcaggcagttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaat 41256323  T
Q  101 tcagacaaaaaatcatacacagcaacaaattgcaaaaaagccatggtccaacctgattcatgaacatcattcaccaagttaaccttccacagactaaaca 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41256322 tcaggcaaaaaatcatacacagcaacaaattgcaaaaaagccatggtccaacatgattcatgaacatcattcaccaagttaaccttccacagactaaaca 41256223  T
Q  201 atctcttagctttcttcctaacatcaaaactaacataaggagaaaaaaccctcaactgctgaaacaaaaaattacaacttctcttattcaaacgaggtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41256222 atctcttagctttcttcctaacatcaaaactaacataaggagaaaaaaccctcaactgctgaaacaaaaaattacaacttctcttattcaaacgaggtaa 41256123  T
Q  301 ttcctttccatcaaccactgcatttgcaccaaaaacaccatcaagtgcatcaagaaccatatctgcaggatttgatgcacatttaaaagcaatctgaagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41256122 ttcctttccatcaaccactgcatttgcaccaaaaacaccatcaagtgcatcaagaaccatatctgcaggatttgatgcacatttaaaagcaatctgaagt 41256023  T
Q  401 tcatccttgattgttaccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcattcttcttgcacaatgcactcaacccttccaaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41256022 tcatccttgattgttaccttatccttaaaattcacacgaatgaaatcccttaacccttttccatcattcttcttgcacaatgcactcaacccttccaaat 41255923  T
Q  501 gagttatagaccctgaaactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgaattttgggttttgg 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  41255922 gagttatagaccctgaaactgcaccgttttgaattgtagggttagaattcgaagatgggtcattattgattgatgaaaagttttgatttttgggttttgt 41255823  T
Q  601 ggtggataattttgaagaagagattgatgggtcgtt 636  Q
    ||||||||||||||||||||||||||||||||||||    
T  41255822 ggtggataattttgaagaagagattgatgggtcgtt 41255787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 41256631 - 41256510
Alignment:
Q  1 ttgaactctatctgacaaagcactaatctgatacaggtcaggcagttcattattagtagcagcagtagcagaataagcagcaagctcaccaacattcaat 100  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41256631 ttgaactctatctgacaaagcaataatctgatacaggtcaagcagttcatcattagtagcagcagtagcagaataagcagcaagctcaccaacattcaat 41256532  T
Q  101 tcagacaaaaaatcatacacag 122  Q
    ||||||||||||||||||||||    
T  41256531 tcagacaaaaaatcatacacag 41256510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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