View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_20 (Length: 312)
Name: NF2281_high_20
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 26511157 - 26511427
Alignment:
| Q |
18 |
acttcatctatgttgaatgtagttttcaaggtcttcatgcaaaagtgttcaaaccacttcaaattatcatctgttttctacacccaaaagcattttgcat |
117 |
Q |
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| T |
26511157 |
acttcatctatgttgaatgtagtctccaaggtcttcatgcaaaagtgttgaaaccacttcaaattatc---tgttttctacacccacaagcattttgcat |
26511253 |
T |
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| Q |
118 |
atattttgcacccaagatgatgatgaaaaccttattgcaacaacttgtggatctatgagataaagtcatgtttcagttacctcgttaacttttcttttca |
217 |
Q |
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| T |
26511254 |
attttttgcacccaagatgatgatgaaaaccttattgccacaacttctggatctatgagataaagtcatgtttcagttacctcggtaacttttcttttca |
26511353 |
T |
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| Q |
218 |
ttaggaccccataaaaatttgaaagagaggttaatagaaacactatggatgaaaatgatgttattgtaatttgt |
291 |
Q |
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| T |
26511354 |
ttaggacgccataaaaatttgaaagagaggttaagaaaaacactatggatgaaaatgatgttattgtaatttgt |
26511427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 32055471 - 32055392
Alignment:
| Q |
211 |
cttttcattaggaccccataaaaatttgaaagagaggttaatagaaacactatggatgaaaatgatgttattgtaatttgttt |
293 |
Q |
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| T |
32055471 |
cttttcattaggatcccataaaaatttcaaagggaggttaagaaaaactctttg---gaaaataatgttattgtaatttgttt |
32055392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 20996495 - 20996403
Alignment:
| Q |
168 |
atctatgagataaagtcatgtttcagttacctcgttaacttttcttttcattaggaccccataaaaatttgaaagagaggttaatagaaacact |
261 |
Q |
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| T |
20996495 |
atctatgagatagaggcacatttcagttacctcaattaccattcttttcattag-accccataaaaactggaaagggaggttaagaaaaacact |
20996403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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