View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_25 (Length: 285)
Name: NF2281_high_25
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 24566992 - 24567249
Alignment:
| Q |
18 |
atgatgcgtattctgttgtttttgttgatgctgcttctattaaatctggatcacatgcattgcctatttagtatgagttgtaatgaataagtagtggagt |
117 |
Q |
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| T |
24566992 |
atgatgcttattctgttgtttttgttgatgctgcttctattaaatctgcatcacatgcattgcctatttagtatgagttgtaatgaataagt---ggagt |
24567088 |
T |
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| Q |
118 |
taatta-taattatactttctttgttggaattgatgannnnnnnaaagaggagttgatgatcttgtattccattttcctgtcattttatttgttcttgat |
216 |
Q |
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| T |
24567089 |
tatttaataattatacttgctttgttggaattgatgatttttttaaagaggagttgatgatcttgtattccattttcctgtcattttatttgttcttgat |
24567188 |
T |
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| Q |
217 |
gttaataaaaattgggagccacatgttcagttgtggatcaatttcaccctccattcatctc |
277 |
Q |
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| T |
24567189 |
gttaataaaaattgggagccacatgttcagttgtggatcaatttcaccctccattcatctc |
24567249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 24555286 - 24555332
Alignment:
| Q |
21 |
atgcgtattctgttgtttttgttgatgctgcttctattaaatctgga |
67 |
Q |
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| T |
24555286 |
atgcttattctgttgtatttgttgatgctgcttctattaaatctgga |
24555332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2931019 - 2931059
Alignment:
| Q |
170 |
ttgatgatcttgtattccattttcctgtcattttatttgtt |
210 |
Q |
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| T |
2931019 |
ttgatgatcttgcattccattttcttgtctttttatttgtt |
2931059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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