View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_26 (Length: 263)
Name: NF2281_high_26
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 2418384 - 2418615
Alignment:
| Q |
16 |
attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2418384 |
attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa |
2418483 |
T |
|
| Q |
116 |
tatccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2418484 |
tatccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcaataaatcttttggtcaaacaagctaacaaaggaatatgatt |
2418583 |
T |
|
| Q |
216 |
ccttatgattatacgaaacttgaagaagtaac |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
2418584 |
ccttatgattatacgaaacttgaagaagtaac |
2418615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 40140462 - 40140235
Alignment:
| Q |
16 |
attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa |
115 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
40140462 |
attatacttaacttcaaaggtagatacattgattaccttctttattcttgtaaacggattgattagtataaatgaattattataccccgccatgataaaa |
40140363 |
T |
|
| Q |
116 |
tatccaccagaagacgtaacatagatagagcggaggaag-cactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgat |
214 |
Q |
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||||| | ||||| ||||||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||| ||||||| |||||||| ||| |
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| T |
40140362 |
tatccgctagaagtcgtaacatagatagagcggaggaagtccctccatcatcttcaagcaataaatcttttggttggggaagctaataaaggaatttgac |
40140263 |
T |
|
| Q |
215 |
tccttatgattatacgaaacttgaagaa |
242 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
40140262 |
tccttatgattatatgaaacttgaagaa |
40140235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 40026702 - 40026480
Alignment:
| Q |
25 |
aacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccacca |
124 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||||| |||||||| |||||| |||| |||||||||||| | | || |||||||||||||||| | | |
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| T |
40026702 |
aacttcaaaggtagaggcagtgattaccttctttatccttgtaaatggattgattagcaaaaatgaattacaaaatcctgccatgataaaatatccgcta |
40026603 |
T |
|
| Q |
125 |
gaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttat--- |
221 |
Q |
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|||||||||||||||| | ||| || |||| | ||||||||||| | ||||||||| |||| |||||||| ||||||||||||||||| || |
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| T |
40026602 |
gaagacgtaacatagacatagctgatgaag---ttcatcatcttcaataaataaatctttcggtcgggcaagctaataaaggaatatgattcctcatgac |
40026506 |
T |
|
| Q |
222 |
gattatacgaaacttgaagaagtaac |
247 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
40026505 |
gattatacgaaacttgaagaagtaac |
40026480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 49440968 - 49441128
Alignment:
| Q |
19 |
agacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatat |
118 |
Q |
| |
|
||||| |||||| ||| ||||| |||||||| ||| |||||||||||||| |||||| |||| | |||||||||||| | ||| |||||||||||||| |
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| T |
49440968 |
agactgaacttcgaagttagaggtattgattaccttgtttattcttgtaaatggattgattagcataaatgaattattgtcccctgccatgataaaatat |
49441067 |
T |
|
| Q |
119 |
ccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaa |
179 |
Q |
| |
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|||| | || ||||||||||| || |||||| ||| |||| |||||||||||||| |||| |
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|
| T |
49441068 |
ccactacaaaacgtaacataggtatagcggaagaaatactccatcatcttcaagcaataaa |
49441128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 49541100 - 49541321
Alignment:
| Q |
25 |
aacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccacca |
124 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||||||| |||||||| |||||| |||| | |||||||||||| | ||| |||| || |||||||||| | |
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| T |
49541100 |
aacttcaaaggtcgaggtattgattaccttctttatccttgtaaatggattgattagcataaatgaattattgtcccctgccataattaaatatccacta |
49541199 |
T |
|
| Q |
125 |
gaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttatgat |
224 |
Q |
| |
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|| ||||||| ||| ||||| |||| ||| ||||||||||| | ||||| |||||||| ||| || || ||||||||||||||| ||| || |
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| T |
49541200 |
gacgacgtaatataagtagagtactcgaagtacttcatcatcttcaatgaataaattttttggtcggacatgcgaataaaggaatatgattcattaccat |
49541299 |
T |
|
| Q |
225 |
tatacgaaacttgaagaagtaa |
246 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
49541300 |
gatacgaaacttgaagaagtaa |
49541321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 49286900 - 49286804
Alignment:
| Q |
43 |
attgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccaccagaagacgtaacatag |
139 |
Q |
| |
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|||||||| |||||||||| ||||||| |||||| ||| |||| ||||||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
49286900 |
attgattaccttctttatttttgtaaatggattgagtagcaaaattgaattatttctccccaccgagataaaatatccgttagaagacgtaacatag |
49286804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 41185477 - 41185362
Alignment:
| Q |
57 |
ttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccaccagaagacgtaacatagatagagcggaggaagca |
156 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||||||||| ||| ||| ||||||||||| | |||| | ||||||||| ||||||||| |||| | |
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|
| T |
41185477 |
ttattcttgtaaatggattgattagtagaaatgaattattgtactttgccagtataaaatatccgctagaatatgtaacatagttagagcggatgaagta |
41185378 |
T |
|
| Q |
157 |
ctctatcatcttcaag |
172 |
Q |
| |
|
|| ||||||| |||| |
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|
| T |
41185377 |
atccatcatctccaag |
41185362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 14963788 - 14963581
Alignment:
| Q |
42 |
cattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattata---ccccaccatgataaaatatccaccagaagacgtaacata |
138 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||| |||| | |||||||||| ||| ||||||||||||||||||||| | |||| |||||||||| |
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|
| T |
14963788 |
cattgattaccttttttattcttgtaaatggattgattagcataaatgaattaacatagtaccccaccatgataaaatatccgctagaaaacgtaacata |
14963689 |
T |
|
| Q |
139 |
gatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttatgattatacgaaacttga |
238 |
Q |
| |
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| |||| | ||||| ||| |||||||||||| | || |||||||| | ||||| |||||||||||||||| || || |||||||| |||| |
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| T |
14963688 |
ggtagatggtgggaagtacttcatcatcttcaagtgatgaactttttggtctggtacgctaataaaggaatatgattcccaatcatgatacgaaatttga |
14963589 |
T |
|
| Q |
239 |
agaagtaa |
246 |
Q |
| |
|
|||||||| |
|
|
| T |
14963588 |
agaagtaa |
14963581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 34678735 - 34678619
Alignment:
| Q |
23 |
ttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccac |
122 |
Q |
| |
|
||||||||| ||| || | ||||||||| |||||||| ||| ||||| |||||| |||| |||||||||||||| || | ||||||||||||||| | |
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|
| T |
34678735 |
ttaacttcagaggaaggggcattgattaccttctttaatctcgtaaatggattgattagcaaaaatgaattattgcactctctcatgataaaatatccgc |
34678636 |
T |
|
| Q |
123 |
cagaagacgtaacatag |
139 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
34678635 |
tagaatacgtaacatag |
34678619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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