View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_high_28 (Length: 249)

Name: NF2281_high_28
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_high_28
NF2281_high_28
[»] chr4 (6 HSPs)
chr4 (73-233)||(16862742-16862902)
chr4 (16-80)||(16861965-16862029)
chr4 (28-80)||(23098310-23098362)
chr4 (17-80)||(46194093-46194156)
chr4 (28-77)||(22631494-22631543)
chr4 (16-80)||(23979383-23979446)
[»] chr3 (2 HSPs)
chr3 (75-219)||(20541695-20541839)
chr3 (82-163)||(601492-601573)
[»] chr6 (4 HSPs)
chr6 (75-219)||(17535205-17535349)
chr6 (16-80)||(15828636-15828700)
chr6 (16-67)||(25055409-25055460)
chr6 (76-132)||(29945608-29945664)
[»] chr7 (3 HSPs)
chr7 (76-209)||(3035233-3035366)
chr7 (17-80)||(37411410-37411473)
chr7 (30-80)||(17074542-17074592)
[»] chr8 (3 HSPs)
chr8 (75-219)||(40613482-40613626)
chr8 (28-80)||(26655137-26655189)
chr8 (79-148)||(20049024-20049093)
[»] chr5 (4 HSPs)
chr5 (16-80)||(28073984-28074048)
chr5 (16-80)||(19779808-19779872)
chr5 (28-80)||(41480788-41480840)
chr5 (76-230)||(20528371-20528525)
[»] chr1 (3 HSPs)
chr1 (16-80)||(50960743-50960807)
chr1 (139-213)||(23940424-23940498)
chr1 (23-80)||(24230028-24230085)
[»] chr2 (1 HSPs)
chr2 (79-149)||(15592435-15592505)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 16862742 - 16862902
Alignment:
Q  73 taattctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16862742 taattctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatc 16862841  T
Q  173 caacaccagaacaagaaaaagctgcaaaggatagtaaacttcttgattataaggtgaaaaa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  16862842 caacaccagaacaagaaaaagctgcaaaggatagtaaacttcttgatcttaaggtgaaaaa 16862902  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 16861965 - 16862029
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16861965 attataaaagttatatttgtcaaacctgaagaatgagaaaggttgatttcaaaggtgtaattcta 16862029  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 23098362 - 23098310
Alignment:
Q  28 atatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23098362 atatttgtcaaacctgaagaatgagaaaggttgatttcaaaggtgtaattcta 23098310  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 46194156 - 46194093
Alignment:
Q  17 ttataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    ||||| |||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  46194156 ttatagaagtgatatttgtcaaacctgaagaatgagaaaggttgatttcaaaagtttaattcta 46194093  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 22631543 - 22631494
Alignment:
Q  28 atatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaatt 77  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  22631543 atatttgtcaaacttgaagaatgagaaaagttgatttcaaaggtgtaatt 22631494  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 23979383 - 23979446
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| |||| ||||||| ||||| |||||||||||||||| | ||||||||||||||||||||    
T  23979383 attatagaagtgatatttg-caaacttgaagaatgagaaaggctgatttcaaaggtgtaattcta 23979446  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 20541695 - 20541839
Alignment:
Q  75 attctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatcca 174  Q
    |||||||||||||||| ||||||||||| ||||||| || ||||||||||||| |||||| ||| |||||| |||  | || ||||||| ||| ||||||    
T  20541695 attctatgatcattggtccatgcttatgcaaaatctccttcgttccaaagagtattgggacttagttgaaactggaattacaattgctcctgaaaatcca 20541794  T
Q  175 acaccagaacaagaaaaagctgcaaaggatagtaaacttcttgat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20541795 acaccagaacaagaaaaagctgcaaaggatagtaaacttcttgat 20541839  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 601492 - 601573
Alignment:
Q  82 gatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctc 163  Q
    ||||||||| | ||| | ||||| |||||||| ||||||||||||| |||| || | |||||| ||||||| ||||||||||    
T  601492 gatcattggtctatgttaatggagaatcttcttcgttccaaagagtattggaatctcattgaacatggtgttaccattgctc 601573  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 17535205 - 17535349
Alignment:
Q  75 attctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatcca 174  Q
    |||||||||| ||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||    
T  17535205 attctatgattattgggccatgcttatggagaaccttctttgttccaaagagttttgggatttaattgaaattggtgtcactgttgctcctgagaatcca 17535304  T
Q  175 acaccagaacaagaaaaagctgcaaaggatagtaaacttcttgat 219  Q
    |||| ||| |||||||| | |||||| || |||||||| ||||||    
T  17535305 acactagagcaagaaaaggttgcaaaagacagtaaactacttgat 17535349  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 15828700 - 15828636
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| |||| ||||||||||| | |||||||||| ||||||| ||||||||||||||||||||    
T  15828700 attatagaagtgatatttgtcaatcatgaagaatgataaaggttgatttcaaaggtgtaattcta 15828636  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 25055409 - 25055460
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaa 67  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  25055409 attatagaagtgatatttgtcaaacctgaagaatgagaaatgttaatttcaa 25055460  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 29945664 - 29945608
Alignment:
Q  76 ttctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgg 132  Q
    ||||||||||||||| ||||| | ||||||||||| || ||||||||||||| ||||    
T  29945664 ttctatgatcattggtccatgttaatggaaaatctccttcgttccaaagagtattgg 29945608  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 3035233 - 3035366
Alignment:
Q  76 ttctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatccaa 175  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| ||||||| |||| ||| || |||||  ||||||||||    
T  3035233 ttctatgatcattgggccatgcttatggaaaatctgcttcgttccaaacaattttgggattttattgaaactggtatcatcaatgctccagagaatccaa 3035332  T
Q  176 caccagaacaagaaaaagctgcaaaggatagtaa 209  Q
    ||||||||||||| |||| ||| |||||||||||    
T  3035333 caccagaacaagagaaagttgcgaaggatagtaa 3035366  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 37411473 - 37411410
Alignment:
Q  17 ttataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  37411473 ttatagaagtgatatttgtcaaacctgaagaatgagaaaggttgatttcaaagatgtaattcta 37411410  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 17074542 - 17074592
Alignment:
Q  30 atttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  17074542 atttgtcaaacctgaagaatgagaaaggttgattttaaaggtgtaattcta 17074592  T

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Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 40613626 - 40613482
Alignment:
Q  75 attctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatcca 174  Q
    |||||||||||||||| ||||||| ||||||||| | |||||||||||||||| |||||| ||  |||||| ||| || || ||||||| ||| ||||||    
T  40613626 attctatgatcattggtccatgctgatggaaaatttcctacgttccaaagagtattgggacttggttgaaactggagttacaattgctcctgaaaatcca 40613527  T
Q  175 acaccagaacaagaaaaagctgcaaaggatagtaaacttcttgat 219  Q
    |||||||||||||||||   |||||||||||||||||||||||||    
T  40613526 acaccagaacaagaaaattttgcaaaggatagtaaacttcttgat 40613482  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 26655189 - 26655137
Alignment:
Q  28 atatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  26655189 atatttatcaaacctgaataatgagaaaggttgatttcaaaggtgtaattcta 26655137  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 20049093 - 20049024
Alignment:
Q  79 tatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatg 148  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| ||||| | ||||||| | ||||||||||    
T  20049093 tatgatcattgggcaatgtttatggaaaattttcttcgttcgaaagaatattgggatctcattgaaaatg 20049024  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 28074048 - 28073984
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28074048 attataaaagtaatatttgtcaaacctgaagaatgagaaaggttgatttcaaaggtgtaattcta 28073984  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 19779808 - 19779872
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  19779808 attatagaagtgatatttgtcaaacatgaagaatgagaaaggttaatttcaaaggtgcaattcta 19779872  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 41480788 - 41480840
Alignment:
Q  28 atatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| ||||||||  ||||||||||||||| ||||||||||||||||||||    
T  41480788 atatttatcaaacctagagaatgagaaaggttgatttcaaaggtgtaattcta 41480840  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 20528371 - 20528525
Alignment:
Q  76 ttctatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatggtgtcaccattgctcttgagaatccaa 175  Q
    |||||||||||||| |||||||| ||||||||||| || | ||||||||| | ||||   || |||  || |||  | | || ||||| ||| |||||||    
T  20528371 ttctatgatcattgagccatgctaatggaaaatctgcttcattccaaagaatattggagcttgattacaactggcatgatcaatgctcctgaaaatccaa 20528470  T
Q  176 caccagaacaagaaaaagctgcaaaggatagtaaacttcttgattataaggtgaa 230  Q
    | ||||||||||| |||| ||| ||||||||||| |||  ||||  |||||||||    
T  20528471 ctccagaacaagagaaagttgcgaaggatagtaagctttgtgatcttaaggtgaa 20528525  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 50960743 - 50960807
Alignment:
Q  16 attataaaagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  50960743 attatagaagtgatatttgtcaaacctgaagaatgagaaaggttgattgcaaaggtgtaattcta 50960807  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 23940498 - 23940424
Alignment:
Q  139 attgaaaatggtgtcaccattgctcttgagaatccaacaccagaacaagaaaaagctgcaaaggatagtaaactt 213  Q
    ||||| ||| ||||||||||||||| |   ||||||||||||||| ||||||||||||||||||||| |||||||    
T  23940498 attgagaattgtgtcaccattgctcctacaaatccaacaccagaataagaaaaagctgcaaaggataataaactt 23940424  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 24230085 - 24230028
Alignment:
Q  23 aagttatatttgtcaaacctgaagaatgagaaaggttaatttcaaaggtgtaattcta 80  Q
    |||| ||||||||||||| ||||||||||||||| || |||| |||||||||||||||    
T  24230085 aagtgatatttgtcaaacttgaagaatgagaaagattgatttgaaaggtgtaattcta 24230028  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 15592435 - 15592505
Alignment:
Q  79 tatgatcattgggccatgcttatggaaaatcttctacgttccaaagagttttgggatttaattgaaaatgg 149  Q
    |||||||||||||| ||| | ||||||||| |||| ||||| ||||| | ||||||| | |||||||||||    
T  15592435 tatgatcattgggcaatgttgatggaaaattttcttcgttcgaaagaatattgggatctcattgaaaatgg 15592505  T

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