View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_33 (Length: 235)
Name: NF2281_high_33
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5752595 - 5752811
Alignment:
| Q |
1 |
agctcaacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatt |
100 |
Q |
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| T |
5752595 |
agctcaacgagactacttcggtgctcatacatatgaaagggttgatatcgaggggtcgtaccatactgaatggttcaagcttgccaagcagtcgaggatt |
5752694 |
T |
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| Q |
101 |
tagattactgtatttgaactcttcaagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtga |
200 |
Q |
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| T |
5752695 |
tagattactgtgtttgaactcttcaagattcctaataaatgtaatgttttttactcaagactgtatactgagttgagcttacatagctgcaatgcggtga |
5752794 |
T |
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| Q |
201 |
agtttatatataccatt |
217 |
Q |
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||||||| ||||||||| |
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| T |
5752795 |
agtttatttataccatt |
5752811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 5756533 - 5756725
Alignment:
| Q |
25 |
tcatacatatgaaagggttgatatcgaggggtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttc |
124 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| ||||||||||| |
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| T |
5756533 |
tcatacatatgaaagggttgatatcgacgggtcttaccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttc |
5756632 |
T |
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| Q |
125 |
aagattcctaataaatgtaatgttttttaatcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccatt |
217 |
Q |
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| T |
5756633 |
aagattcctaataaatgtaatgttttttactcaagactgtatgctgagttgagcttacatagctgcaatgcggtgaagtttatatataccatt |
5756725 |
T |
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