View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_high_39 (Length: 203)

Name: NF2281_high_39
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_high_39
NF2281_high_39
[»] chr4 (9 HSPs)
chr4 (19-186)||(3671640-3671807)
chr4 (20-132)||(54861868-54861980)
chr4 (20-128)||(55665264-55665372)
chr4 (20-132)||(55635583-55635696)
chr4 (32-128)||(52985562-52985658)
chr4 (37-123)||(54627379-54627465)
chr4 (20-135)||(55659042-55659160)
chr4 (20-132)||(50191742-50191854)
chr4 (137-186)||(54861725-54861774)
[»] chr8 (2 HSPs)
chr8 (20-135)||(9889862-9889977)
chr8 (135-186)||(9890056-9890107)
[»] chr2 (2 HSPs)
chr2 (20-132)||(13401763-13401875)
chr2 (137-186)||(13401970-13402019)
[»] chr1 (2 HSPs)
chr1 (34-89)||(22514483-22514538)
chr1 (20-89)||(37310524-37310593)
[»] chr7 (1 HSPs)
chr7 (20-88)||(46154649-46154717)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 3671807 - 3671640
Alignment:
Q  19 caagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagac 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3671807 caagaagtcatggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagac 3671708  T
Q  119 tggtggagctccttttgaacccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3671707 tggtggagctcctttcgaacccatctccttcagtggtgattcctgcactccgcacattgggaaatatt 3671640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 54861980 - 54861868
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 119  Q
    ||||||||||  | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54861980 aagaagtcctaaccgatgcatggtgggcactctcgtatctttctgatggaacaaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagact 54861881  T
Q  120 ggtggagctcctt 132  Q
    |||| ||||||||    
T  54861880 ggtgcagctcctt 54861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 55665372 - 55665264
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 119  Q
    |||||||||||   |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55665372 aagaagtcctgagtgatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagact 55665273  T
Q  120 ggtggagct 128  Q
    |||||||||    
T  55665272 ggtggagct 55665264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 55635583 - 55635696
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcata-tctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagac 118  Q
    ||||||||||| ||||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||| |||||| | |||||||||||||||||||    
T  55635583 aagaagtcctgtcagatgcatgctgggcactctcataatatttctgatggaatgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagac 55635682  T
Q  119 tggtggagctcctt 132  Q
    ||||||||||||||    
T  55635683 tggtggagctcctt 55635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 52985658 - 52985562
Alignment:
Q  32 cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagct 128  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  52985658 cagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagct 52985562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 54627379 - 54627465
Alignment:
Q  37 gcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtg 123  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||    
T  54627379 gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtg 54627465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 55659160 - 55659042
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttct---gatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcag 116  Q
    |||||||| || |||| |||||||||||||||||||||||||||    ||||  |||||||| ||||||||||||| |||||||| ||  ||||||  ||    
T  55659160 aagaagtcgtgacagaagcatgctgggcactctcatatctttctaaatatggttcaaatgacgaaatccaagcggtaatcgaggctggcatatgtgatag 55659061  T
Q  117 actggtggagctccttttg 135  Q
    ||| || ||||||||||||    
T  55659060 actagtagagctccttttg 55659042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 50191854 - 50191742
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 119  Q
    ||||||| ||| ||||||| ||||||||  | ||||| || |||||||| |||||||||||||||||||   | || || ||||||||||||||| || |    
T  50191854 aagaagttctgacagatgcctgctgggctttatcatacctatctgatggcacaaatgacaaaatccaagaaattattgacgcaggtgtatgtggccgatt 50191755  T
Q  120 ggtggagctcctt 132  Q
    |||| ||||||||    
T  50191754 ggtgcagctcctt 50191742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 54861774 - 54861725
Alignment:
Q  137 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 186  Q
    ||||||||||||||||| |||||||||   |||||||| |||||||||||    
T  54861774 acccatctccttcagtgctgattcctgtcgttcgcacaatgggaaatatt 54861725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 9889862 - 9889977
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9889862 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 9889961  T
Q  120 ggtggagctccttttg 135  Q
    ||||||||||||||||    
T  9889962 ggtggagctccttttg 9889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 9890056 - 9890107
Alignment:
Q  135 gaacccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 186  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9890056 gaacccttctccttcagtggtgattcctgcacttcgcacattgggaaatatt 9890107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 13401763 - 13401875
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagact 119  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13401763 aagaagtcctgacagatgcatgctgggcactctcttatctttctgatggaacaaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagact 13401862  T
Q  120 ggtggagctcctt 132  Q
     ||| ||||||||    
T  13401863 agtgcagctcctt 13401875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 13401970 - 13402019
Alignment:
Q  137 acccatctccttcagtggtgattcctgcacttcgcacattgggaaatatt 186  Q
    ||||||||||||||||| |||| ||||||||||||||  |||||||||||    
T  13401970 acccatctccttcagtgctgatccctgcacttcgcacggtgggaaatatt 13402019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 22514538 - 22514483
Alignment:
Q  34 gatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 89  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  22514538 gatgcctgctgggcactatcatatctttctgatggtacaaatgaaaaaattcaagc 22514483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 37310593 - 37310524
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagc 89  Q
    |||||||| || | ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||    
T  37310593 aagaagtcttgactgatgcctgctgggcactatcatatctttctgatggtacaaacgataaaattcaagc 37310524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 46154717 - 46154649
Alignment:
Q  20 aagaagtcctggcagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaag 88  Q
    |||||||| || | ||||| || |||||||| |||||||||||||||||  ||||||||||||| ||||    
T  46154717 aagaagtcttgactgatgcctgttgggcactttcatatctttctgatggtgcaaatgacaaaattcaag 46154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University