View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_high_8 (Length: 425)
Name: NF2281_high_8
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 2943439 - 2943841
Alignment:
| Q |
13 |
gatggaggtactatgctgaaccatttggtcaacttcagcatattgnnnnnnnaccattccagttgtatagtttcattgatcttcaagtttaggtatttaa |
112 |
Q |
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| T |
2943439 |
gatggaggtactatgctgaaccatttggtcaacttcagcatattgtttttttaccattccagttgtatagtttcattgatcttcaagtttaggtatttaa |
2943538 |
T |
|
| Q |
113 |
tttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgaggttacaacccgatcattcaaaatttacccaagcaccgaccaagcttcca |
212 |
Q |
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| T |
2943539 |
tttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttacccaagcaccgaccaagcttcca |
2943638 |
T |
|
| Q |
213 |
aatattcctgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttgatgtttatattatgagta-nnnnnnnggtgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2943639 |
aatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgtttatattatgagtattttttttggtgt |
2943738 |
T |
|
| Q |
312 |
tgttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcaatttactaccactggaactgttcttgacaatggaacacag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2943739 |
tgttaatgaagccatattgaaggattctgattatggtgaagttgatagagctgagtgtcagtttactaccactggaactgttcttgacaatggaacacag |
2943838 |
T |
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| Q |
412 |
gtt |
414 |
Q |
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| T |
2943839 |
gtt |
2943841 |
T |
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