View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_1 (Length: 690)
Name: NF2281_low_1
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 32399094 - 32398692
Alignment:
| Q |
17 |
cactatatgcatgagacatcatgtgtattttagtcggagttgagcccacaaccccttatctcaccaacccttattttcctcactctccaaagctatcaaa |
116 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32399094 |
cactgtatgcatgagacatcatgtgtattttagcgggagttgagcccacaaccccttatctcaccaacccttattttcctcactctccaaagctatcaaa |
32398995 |
T |
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| Q |
117 |
gcaccttatcagtagtccttatattatacaatgataaattatcaacacatgtatcttgtcctttgagcatattggataagattccagttcttacaatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32398994 |
gcaccttatcagtagtccttatattatacaatgataaattatcaacacatgtattttgtcctatgagcatattggataagattccagttcttacaatatt |
32398895 |
T |
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| Q |
217 |
acaaggtcggatgaatatgtagttgtgacggcagtgctgctagcactagttttcttctcttatcggattccagttttcttcttttaaacaaaaagagcgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| | |
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| T |
32398894 |
acaaggtcggatgaatatgtagttgtgacggcagtgctgctagcactagttttcttc-------------------tctttttttaaacaaaaaaagcct |
32398814 |
T |
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| Q |
317 |
aacggccaaaattcacactcactaagtactgaaaagggaggaattgttgattcgaacccgcaccc--cagcatatcaaatg----tgtctgcactctttt |
410 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
32398813 |
aacggccaaaattcacactcactaagtgctgaaaagggaggaattgttgattcgaacccgcaccccacagcatatcaaatgtgtctgtctgcactctttt |
32398714 |
T |
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| Q |
411 |
aacttatgggctgtacttacaa |
432 |
Q |
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| T |
32398713 |
aacttatgggctgtacttacaa |
32398692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 448 - 676
Target Start/End: Complemental strand, 32398650 - 32398422
Alignment:
| Q |
448 |
cttatagatgaagttcttgcatccttgtatcgtgctggggtcatttcagttatcaggtctgctccaagttcacttgaggatgcagatattgagaaattca |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32398650 |
cttatagatgaagttcttgcatccttgtatcgtgctggggccatttcagttatcaggtctgctccaagttcacttgaggatgcagatattgagaaattca |
32398551 |
T |
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| Q |
548 |
agtcgagcttgatgaaaaggttccaagatcttaagtatgacgtgtcttcctgacttttaatagagtttcttgccttttttacccttcttcttgttggctc |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32398550 |
agtcgagcttgatgaaaaggttccaagatcttaagtatgatgtgtcttcctgacttttactagagtttcttgccttttttacccttcttcttgttggctc |
32398451 |
T |
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| Q |
648 |
ggagcatgaaatatggtgatgatattaga |
676 |
Q |
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| T |
32398450 |
ggagcatgaaatatggtgatgatattaga |
32398422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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