View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_10 (Length: 421)
Name: NF2281_low_10
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 24260584 - 24260977
Alignment:
| Q |
13 |
tgaaggaactggaatcaaaataggtgcaccaaaccgaggaaaaattagtttttattcataacattgaagtgtcaaatatgcgttgtaatgattttgaata |
112 |
Q |
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| T |
24260584 |
tgaaggaactggaatcaaaataggcgcaccaaaccgaggaaaaattagtttttattcataacattgaagtgtcaaatatgcgttgtaatgattttgaata |
24260683 |
T |
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| Q |
113 |
ttttctgttgttttcgaacttacattagctttaagtattttctattaaaattgtgtagtgacagtgttatcgtagttttagtgtttaaacttctttgttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||| |||||||||||||||| |||||||||| |
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| T |
24260684 |
ttttctgttgttttcgaacttacattagctttaagtattttcttttaaaattgcgtagtgatagtgttgtcgcagttttagtgtttaaatttctttgttg |
24260783 |
T |
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| Q |
213 |
cagttcagaagtttatcatgaattaatgtccattttatggcatatctattcgacattatatcatgatgtgatacaatgatttctaattttatagttttta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260784 |
cagttcagaagtttatcatgaattaatgtccattttatggcatatctattcgacattatatcatgatgtgatacaatgatttctaattttatagttttta |
24260883 |
T |
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| Q |
313 |
ataacatgtctgattaggtcgtacatggtttcc-atatatcacctcactttatccaattttgaagatagttatcggtgatcatgagtttataat |
405 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260884 |
ataacatgtctgattaggtcgtacatggtttccaatatatcacctcactttatccaattttgaagatagttatcggtgatcatgagtttataat |
24260977 |
T |
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