View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_13 (Length: 411)
Name: NF2281_low_13
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 52293672 - 52293267
Alignment:
| Q |
1 |
aatattctgtctacctcttcatctttctataaagcttccaaagcctcgatccttcctccaaaaattatatccatgagtgatatcaagggcttgttcttct |
100 |
Q |
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| T |
52293672 |
aatattctgtctacctcttcatctttctataaagcttccaaagcctcgatccttcctccaaaa-ttatatccatgagtgatttcaaagtcttgttcttct |
52293574 |
T |
|
| Q |
101 |
tcaacacaataacacttgcgcaactcatgtacaagcaaactgctttccannnnnnnctatgatcagggtgctggttgtacaaaagaaccatctgtcatac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52293573 |
tcaacacaataacacttgcgcaactcatgtacaagcaaactgctttccatttttttctatgatcagggtgctggttgtacaaaagaaccatctgtcatac |
52293474 |
T |
|
| Q |
201 |
ttcaattactactgaatacagaaaatgtctgtttctaatttaattcaggctcgtaattgtgctccaataccagatgttatgacaactgnnnnnnnngaac |
300 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52293473 |
ttcaattactactaaatacagaaaatgtctgtttctaatttaattcaggctcgtaattgtgctccaataccagatgttatgacaactgaaaaaaaagaac |
52293374 |
T |
|
| Q |
301 |
taaaagtaaaagtttctctactgcactcaagaactgactttggctattattctatagtcttgcataacaaagtacaataagaaaagacacttccacaggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52293373 |
taaaagtaaaagtttctctactgcactcaagaactgactttggctattattctatagtcttgcataacaaagtacaataagaaaagacacttccacatgt |
52293274 |
T |
|
| Q |
401 |
tctgctc |
407 |
Q |
| |
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|| |||| |
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|
| T |
52293273 |
tcagctc |
52293267 |
T |
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