View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_low_14 (Length: 403)

Name: NF2281_low_14
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_low_14
NF2281_low_14
[»] chr1 (3 HSPs)
chr1 (82-388)||(30508181-30508487)
chr1 (13-86)||(30508056-30508129)
chr1 (334-382)||(24279157-24279205)
[»] chr4 (2 HSPs)
chr4 (247-385)||(36541834-36541972)
chr4 (329-367)||(723859-723897)
[»] chr3 (2 HSPs)
chr3 (247-385)||(19272206-19272344)
chr3 (329-382)||(18558835-18558888)
[»] chr7 (2 HSPs)
chr7 (325-388)||(18308368-18308435)
chr7 (330-388)||(4156684-4156742)
[»] scaffold0023 (1 HSPs)
scaffold0023 (329-382)||(148411-148464)
[»] chr6 (2 HSPs)
chr6 (329-382)||(8671418-8671471)
chr6 (329-382)||(11233840-11233893)
[»] chr5 (2 HSPs)
chr5 (329-382)||(38838711-38838764)
chr5 (329-382)||(40934857-40934910)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 82 - 388
Target Start/End: Original strand, 30508181 - 30508487
Alignment:
Q  82 tatatgcgtatgtctaatatgaagcttgtcaaagggaaaacctttactatttttattataaaataaatattacaataattcaaattggagaacatatata 181  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30508181 tatatgcgtatgtctaatatgaagcttgtcaaagggcaaacctttactatttttattataaaataaatattataataattcaaattggagaacatatata 30508280  T
Q  182 atatttcattaaaatttactaaaatactaagattcgcctttgggccaggttcatagtttaagtataaaaatgtatcttcactgtatttttacgcgtagag 281  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  30508281 atattttattaaaatttactaaaatactaagattcgcctttgggccaggttcatagtgtaagtataaaaatggatcttcactgtatttttacgcgtagag 30508380  T
Q  282 ttgatatgtaaaacattacttgcaaacttaagtcttcatgcttttttgaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaataca 381  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  30508381 ttgatatgtaaaacattacttaccaacttaagtcttcatgctttttcgaaggctcttatcaattttgtttattttgcaattgttttttggtgcatataca 30508480  T
Q  382 taatttg 388  Q
    |||||||    
T  30508481 taatttg 30508487  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 30508056 - 30508129
Alignment:
Q  13 aatatttaggctcatatttagaaaattttgtaaatgtcgatattagattgacctaaaaaattaaataattatat 86  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30508056 aatatttaggttcatatttagaaaattttgtaaatgtccatattagattgacctaaaaaattaaataattatat 30508129  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 24279205 - 24279157
Alignment:
Q  334 ctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  24279205 ctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 24279157  T

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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 247 - 385
Target Start/End: Complemental strand, 36541972 - 36541834
Alignment:
Q  247 aaaaatgtatcttcactgtatttttacgcgtagagttgatatgtaaaacattacttgcaaacttaagtcttcatgcttttttgaaggctcttatcaattt 346  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||||||||||||| | |||||||||| |||| |||||||||||||||||||| || |    
T  36541972 aaaaatgtatcttcaatatatttttacgcgtagagctaatatgtaaaacattacttaccaacttaagtcctcatacttttttgaaggctcttatcgatat 36541873  T
Q  347 tgtttattttgcaattgtttttcggtgcaaatacataat 385  Q
    ||||||||||||||||||||||| ||||| |||| ||||    
T  36541872 tgtttattttgcaattgtttttcagtgcatatacttaat 36541834  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 723859 - 723897
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttt 367  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  723859 gaagtctcttatcaattttgtttattttgcaattatttt 723897  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 19272206 - 19272344
Alignment:
Q  247 aaaaatgtatcttcactgtatttttacgcgtagagttgatatgtaaaacattacttgcaaacttaagtcttcatgcttttttgaaggctcttatcaattt 346  Q
    |||||||||||||||   ||||||||||| || |||||||| | ||||||||||||||  ||||||||| ||||||||| | |||| |||||||| ||||    
T  19272206 aaaaatgtatcttcaacatatttttacgcatatagttgataggaaaaacattacttgctgacttaagtcctcatgctttatcgaagactcttatcgattt 19272305  T
Q  347 tgtttattttgcaattgtttttcggtgcaaatacataat 385  Q
    ||||||||||| ||||| |||| |||||| |||||||||    
T  19272306 tgtttattttgaaattgcttttgggtgcatatacataat 19272344  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 18558835 - 18558888
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  18558835 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 18558888  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 18308368 - 18308435
Alignment:
Q  325 ttttgaaggctcttatcaattttgtttattttgcaattg----tttttcggtgcaaatacataatttg 388  Q
    ||||||||||||||||| |||||||||||||||||||||    ||||| |||||||||||||||||||    
T  18308368 ttttgaaggctcttatcgattttgtttattttgcaattgtgttttttttggtgcaaatacataatttg 18308435  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 4156742 - 4156684
Alignment:
Q  330 aaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacataatttg 388  Q
    |||||||||||| || ||||||||| ||||||||||||||||| || ||||||||||||    
T  4156742 aaggctcttatcgatattgtttattctgcaattgtttttcggttcatatacataatttg 4156684  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 148411 - 148464
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  148411 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 148464  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 8671418 - 8671471
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  8671418 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 8671471  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 11233840 - 11233893
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  11233840 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 11233893  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 38838711 - 38838764
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  38838711 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 38838764  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 40934857 - 40934910
Alignment:
Q  329 gaaggctcttatcaattttgtttattttgcaattgtttttcggtgcaaatacat 382  Q
    |||| |||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  40934857 gaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacat 40934910  T

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