View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2281_low_17 (Length: 369)
Name: NF2281_low_17
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 350
Target Start/End: Original strand, 29662771 - 29663076
Alignment:
| Q |
36 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29662771 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaaggttgtc |
29662870 |
T |
|
| Q |
136 |
catatgaatatgatgttgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattc |
235 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29662871 |
catatgaata---------agcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattc |
29662961 |
T |
|
| Q |
236 |
tcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattgcgaaggatgtcaaggttcgagttgtggtgattggcatgaagtggatgcaggcaga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29662962 |
tcggtgaaaaccaaatctccatgaatcaaaaaatgcccgaaattgcgaaggatgtcaaggttcgagttgtggtgattggcatgaagtggatgcaggcaga |
29663061 |
T |
|
| Q |
336 |
gagggagtttcatgg |
350 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29663062 |
gagggagtttcatgg |
29663076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 347
Target Start/End: Complemental strand, 33201579 - 33201384
Alignment:
| Q |
152 |
tgaagcatggggttttcatgagaattggtccaattaagaatgcttatccctcaagtagcaagatgctgggttacatgtacattctcggtgaaaaccaaat |
251 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||| || || |||| ||||||||||||||| | |
|
|
| T |
33201579 |
tgaagcatggggttttcatgcgaattggtccaatagagaatgcctatctctcaagtagcaagatgcctgggtatgtgtatgttctcggtgaaaacccata |
33201480 |
T |
|
| Q |
252 |
ctccatgaatcaaaaaatgcccgaaattgcgaaggatgtcaaggttcgagttgtggtgattggcatgaagtggatgcaggcagagagggagtttca |
347 |
Q |
| |
|
| ||||||||| ||||||||| | ||||| || |||||||||||||||||||||||||| || | ||||||||| ||||||||||||| ||||| |
|
|
| T |
33201479 |
tttcatgaatcagaaaatgcccaagattgccaaagatgtcaaggttcgagttgtggtgatcggtacaaagtggatggaggcagagagggaatttca |
33201384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 33201707 - 33201613
Alignment:
| Q |
36 |
actggataaaattggagaagggaaagttaggcaacatacaggggatgttctgttccaagttgttttcaatgttgtgaccttcaagattttcaagg |
130 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33201707 |
actggataaaataggagaggggaaagtcaggcaacatactggagatgttctgttccctgttgttttcaatgccgtgaccttcaagattttcaagg |
33201613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University