View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_23 (Length: 305)
Name: NF2281_low_23
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 30275243 - 30275162
Alignment:
| Q |
6 |
catgtattcacaattggtggagaaccactcagttggtcttaagcatcatgaacttgatgtttttctgatgtttattgaagag |
87 |
Q |
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| T |
30275243 |
catggattcacaattggtggagaaccactcagttggttttaagcatcatgaactcgatgtttttctgatgtttattgaagag |
30275162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 37751787 - 37751914
Alignment:
| Q |
102 |
ggttatgacagtagtgcttttattttctatttctactactgtgacatgttcatgta-ttaatct------acagagaataggaaaatcttaaatgtagtt |
194 |
Q |
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| T |
37751787 |
ggttatgacagttgtgcttttattttctattt---ctcctgtgacatgttcatgtatttactctatcgagatggagattagggaaatcttaagtgtagtt |
37751883 |
T |
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| Q |
195 |
tcatgtggctaaccgataatatttttacgtg |
225 |
Q |
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| T |
37751884 |
ttatgtggctaaccattaatatttctacgtg |
37751914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 7779525 - 7779491
Alignment:
| Q |
102 |
ggttatgacagtagtgcttttattttctatttcta |
136 |
Q |
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| T |
7779525 |
ggttatgacagtagtgcttttattttctatttcta |
7779491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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