View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_low_28 (Length: 263)

Name: NF2281_low_28
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_low_28
NF2281_low_28
[»] chr1 (7 HSPs)
chr1 (16-247)||(2418384-2418615)
chr1 (16-242)||(40140235-40140462)
chr1 (25-247)||(40026480-40026702)
chr1 (19-179)||(49440968-49441128)
chr1 (25-246)||(49541100-49541321)
chr1 (43-139)||(49286804-49286900)
chr1 (57-172)||(41185362-41185477)
[»] chr3 (1 HSPs)
chr3 (42-246)||(14963581-14963788)
[»] chr2 (1 HSPs)
chr2 (23-139)||(34678619-34678735)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 2418384 - 2418615
Alignment:
Q  16 attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2418384 attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa 2418483  T
Q  116 tatccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2418484 tatccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcaataaatcttttggtcaaacaagctaacaaaggaatatgatt 2418583  T
Q  216 ccttatgattatacgaaacttgaagaagtaac 247  Q
    ||||||||||||||||||||||||||||||||    
T  2418584 ccttatgattatacgaaacttgaagaagtaac 2418615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 40140462 - 40140235
Alignment:
Q  16 attagacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaa 115  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||    
T  40140462 attatacttaacttcaaaggtagatacattgattaccttctttattcttgtaaacggattgattagtataaatgaattattataccccgccatgataaaa 40140363  T
Q  116 tatccaccagaagacgtaacatagatagagcggaggaag-cactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgat 214  Q
    ||||| | ||||| ||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||     ||||||| |||||||| |||     
T  40140362 tatccgctagaagtcgtaacatagatagagcggaggaagtccctccatcatcttcaagcaataaatcttttggttggggaagctaataaaggaatttgac 40140263  T
Q  215 tccttatgattatacgaaacttgaagaa 242  Q
    |||||||||||||| |||||||||||||    
T  40140262 tccttatgattatatgaaacttgaagaa 40140235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 247
Target Start/End: Complemental strand, 40026702 - 40026480
Alignment:
Q  25 aacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccacca 124  Q
    |||||||||||||||| || |||||| ||||||||| |||||||| |||||| |||| ||||||||||||  | | ||  |||||||||||||||| | |    
T  40026702 aacttcaaaggtagaggcagtgattaccttctttatccttgtaaatggattgattagcaaaaatgaattacaaaatcctgccatgataaaatatccgcta 40026603  T
Q  125 gaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttat--- 221  Q
    |||||||||||||||| | ||| || ||||   |  |||||||||||  | ||||||||| ||||   |||||||| ||||||||||||||||| ||       
T  40026602 gaagacgtaacatagacatagctgatgaag---ttcatcatcttcaataaataaatctttcggtcgggcaagctaataaaggaatatgattcctcatgac 40026506  T
Q  222 gattatacgaaacttgaagaagtaac 247  Q
    ||||||||||||||||||||||||||    
T  40026505 gattatacgaaacttgaagaagtaac 40026480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 49440968 - 49441128
Alignment:
Q  19 agacttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatat 118  Q
    ||||| |||||| ||| |||||  |||||||| ||| |||||||||||||| |||||| |||| | |||||||||||| | |||  ||||||||||||||    
T  49440968 agactgaacttcgaagttagaggtattgattaccttgtttattcttgtaaatggattgattagcataaatgaattattgtcccctgccatgataaaatat 49441067  T
Q  119 ccaccagaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaa 179  Q
    |||| | || ||||||||||| || |||||| |||  |||| |||||||||||||| ||||    
T  49441068 ccactacaaaacgtaacataggtatagcggaagaaatactccatcatcttcaagcaataaa 49441128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 49541100 - 49541321
Alignment:
Q  25 aacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccacca 124  Q
    |||||||||||| |||  |||||||| ||||||||| |||||||| |||||| |||| | |||||||||||| | |||  |||| || |||||||||| |    
T  49541100 aacttcaaaggtcgaggtattgattaccttctttatccttgtaaatggattgattagcataaatgaattattgtcccctgccataattaaatatccacta 49541199  T
Q  125 gaagacgtaacatagatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttatgat 224  Q
    || ||||||| |||  |||||     |||| |||  |||||||||||  | ||||| ||||||||  ||| || || ||||||||||||||| |||  ||    
T  49541200 gacgacgtaatataagtagagtactcgaagtacttcatcatcttcaatgaataaattttttggtcggacatgcgaataaaggaatatgattcattaccat 49541299  T
Q  225 tatacgaaacttgaagaagtaa 246  Q
     |||||||||||||||||||||    
T  49541300 gatacgaaacttgaagaagtaa 49541321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 49286900 - 49286804
Alignment:
Q  43 attgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccaccagaagacgtaacatag 139  Q
    |||||||| |||||||||| ||||||| ||||||  ||| |||| |||||||||   |||||||  ||||||||||||   ||||||||||||||||    
T  49286900 attgattaccttctttatttttgtaaatggattgagtagcaaaattgaattatttctccccaccgagataaaatatccgttagaagacgtaacatag 49286804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 41185477 - 41185362
Alignment:
Q  57 ttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccaccagaagacgtaacatagatagagcggaggaagca 156  Q
    ||||||||||||| |||||| |||||| |||||||||||| |||    |||  ||||||||||| | |||| | ||||||||| ||||||||| |||| |    
T  41185477 ttattcttgtaaatggattgattagtagaaatgaattattgtactttgccagtataaaatatccgctagaatatgtaacatagttagagcggatgaagta 41185378  T
Q  157 ctctatcatcttcaag 172  Q
     || ||||||| ||||    
T  41185377 atccatcatctccaag 41185362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 14963788 - 14963581
Alignment:
Q  42 cattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattata---ccccaccatgataaaatatccaccagaagacgtaacata 138  Q
    ||||||||| ||| |||||||||||||| |||||| |||| | ||||||||||  |||   ||||||||||||||||||||| | |||| ||||||||||    
T  14963788 cattgattaccttttttattcttgtaaatggattgattagcataaatgaattaacatagtaccccaccatgataaaatatccgctagaaaacgtaacata 14963689  T
Q  139 gatagagcggaggaagcactctatcatcttcaagcagtaaatcttttggtcaaacaagctaacaaaggaatatgattccttatgattatacgaaacttga 238  Q
    | ||||  |  ||||| |||  ||||||||||||   | ||  ||||||||    | ||||| ||||||||||||||||  || || |||||||| ||||    
T  14963688 ggtagatggtgggaagtacttcatcatcttcaagtgatgaactttttggtctggtacgctaataaaggaatatgattcccaatcatgatacgaaatttga 14963589  T
Q  239 agaagtaa 246  Q
    ||||||||    
T  14963588 agaagtaa 14963581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 34678735 - 34678619
Alignment:
Q  23 ttaacttcaaaggtagagacattgattatcttctttattcttgtaaaaggattgcttagtaaaaatgaattattataccccaccatgataaaatatccac 122  Q
    ||||||||| ||| || | ||||||||| |||||||| ||| ||||| |||||| |||| ||||||||||||||  || |   ||||||||||||||| |    
T  34678735 ttaacttcagaggaaggggcattgattaccttctttaatctcgtaaatggattgattagcaaaaatgaattattgcactctctcatgataaaatatccgc 34678636  T
Q  123 cagaagacgtaacatag 139  Q
     |||| |||||||||||    
T  34678635 tagaatacgtaacatag 34678619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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