View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_3 (Length: 622)
Name: NF2281_low_3
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 17 - 609
Target Start/End: Complemental strand, 35351954 - 35351362
Alignment:
| Q |
17 |
atttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaaagnnnnnnntgaaacagtaatacgaaaactttgttgacataggt |
116 |
Q |
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| T |
35351954 |
atttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaaagaaaaaaatgaaacagtaatacaaaaactttgttgacataggt |
35351855 |
T |
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| Q |
117 |
atttcttaccatattgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatcaccaaacttgtttagctgtcctgcatctacagg |
216 |
Q |
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| T |
35351854 |
atttcttaccatattgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatcaccaaacttgtttagctgtcctgcatctacagg |
35351755 |
T |
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| Q |
217 |
tggagggttactttgctcagaggtatcctccaaagattgtgtttctccatttttatgtgcttctttctcctacgtaagtttaaaaattgtattgtcaagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351754 |
tggagggttactttgctcagaggtatcctccaaagattgtgtttctccatttttatgtgcttctttctcctacgtaagtttaaaaattgtattgtcaagg |
35351655 |
T |
|
| Q |
317 |
aaaagatatgaaaaaacaaaggtcaacatgcagagcagataaccattttttctacgatgtgtgaatgtgatgagatgcatgtaaaataatatgcacatgt |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351654 |
aaaagatatgaaaaaacaaaggtcagcatgcagagcagataaccattttttctacgatgtgtgaatgtgatgagatgcatgtaaaataatatgcacatgc |
35351555 |
T |
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| Q |
417 |
acaatgataactatgccactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttccttaaacatcac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351554 |
acaatgataactatgccactaagaataatatgttgctatttggttttgctgaaatagtcacatcctatataaaaataaaaagtttttccttaaacatcac |
35351455 |
T |
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| Q |
517 |
ttctgatattcaatttaagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcaccct |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351454 |
ttctgatattcaatttaagcaaataattgaatttacaaatctgattttctcacactacctttctctctcatcacttttatacctcctcaccct |
35351362 |
T |
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