View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_low_31 (Length: 247)

Name: NF2281_low_31
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_low_31
NF2281_low_31
[»] chr7 (26 HSPs)
chr7 (87-207)||(40106760-40106880)
chr7 (86-206)||(48652966-48653086)
chr7 (85-207)||(18366459-18366580)
chr7 (86-207)||(12910867-12910990)
chr7 (96-207)||(22078574-22078685)
chr7 (83-207)||(21490611-21490739)
chr7 (96-208)||(3692237-3692350)
chr7 (207-247)||(18938969-18939009)
chr7 (86-157)||(49169490-49169562)
chr7 (205-243)||(32555332-32555370)
chr7 (165-206)||(13163478-13163519)
chr7 (208-247)||(387983-388022)
chr7 (208-247)||(25683901-25683940)
chr7 (86-207)||(15873103-15873223)
chr7 (205-236)||(30086588-30086619)
chr7 (165-207)||(12195971-12196013)
chr7 (207-236)||(30085620-30085649)
chr7 (207-240)||(38974692-38974725)
chr7 (205-233)||(10356386-10356414)
chr7 (208-236)||(10715838-10715866)
chr7 (205-233)||(18363292-18363320)
chr7 (205-233)||(18852781-18852809)
chr7 (205-233)||(19778542-19778570)
chr7 (205-233)||(25982986-25983014)
chr7 (205-233)||(25986922-25986950)
chr7 (205-233)||(35121701-35121729)
[»] chr8 (21 HSPs)
chr8 (86-207)||(41957597-41957718)
chr8 (86-207)||(35841087-35841207)
chr8 (85-182)||(26162537-26162632)
chr8 (205-247)||(18552999-18553041)
chr8 (209-247)||(35735745-35735783)
chr8 (86-207)||(44437060-44437181)
chr8 (211-247)||(6745025-6745061)
chr8 (205-247)||(44807099-44807141)
chr8 (85-144)||(40840648-40840707)
chr8 (205-236)||(43657489-43657520)
chr8 (209-247)||(8038063-8038101)
chr8 (86-162)||(6161737-6161814)
chr8 (207-236)||(43658466-43658495)
chr8 (205-233)||(15187925-15187953)
chr8 (211-247)||(20057222-20057257)
chr8 (205-233)||(30845848-30845876)
chr8 (205-233)||(36226703-36226731)
chr8 (206-238)||(36801647-36801679)
chr8 (205-233)||(37953371-37953399)
chr8 (205-233)||(42267746-42267774)
chr8 (205-233)||(45106432-45106460)
[»] chr2 (22 HSPs)
chr2 (99-207)||(40728581-40728689)
chr2 (90-207)||(41339395-41339512)
chr2 (149-206)||(35669969-35670026)
chr2 (206-247)||(7538512-7538553)
chr2 (206-247)||(20494579-20494620)
chr2 (205-247)||(35698882-35698924)
chr2 (86-207)||(40448439-40448559)
chr2 (120-207)||(28266310-28266398)
chr2 (86-150)||(35669623-35669687)
chr2 (165-207)||(18291962-18292004)
chr2 (165-202)||(44789469-44789506)
chr2 (164-200)||(29271523-29271559)
chr2 (205-236)||(7537410-7537441)
chr2 (85-207)||(32735250-32735371)
chr2 (205-247)||(19256617-19256658)
chr2 (200-233)||(15977200-15977233)
chr2 (165-206)||(34397061-34397102)
chr2 (205-233)||(3263032-3263060)
chr2 (205-233)||(9715137-9715165)
chr2 (205-233)||(20436055-20436083)
chr2 (205-233)||(24895199-24895227)
chr2 (205-233)||(25429919-25429947)
[»] chr6 (23 HSPs)
chr6 (82-206)||(13772542-13772666)
chr6 (85-206)||(10750754-10750875)
chr6 (86-207)||(24164743-24164862)
chr6 (205-247)||(26171236-26171278)
chr6 (206-247)||(7324897-7324938)
chr6 (83-207)||(23259754-23259877)
chr6 (85-207)||(32449392-32449513)
chr6 (208-247)||(929207-929246)
chr6 (205-236)||(21003365-21003396)
chr6 (167-202)||(26181901-26181936)
chr6 (206-236)||(28931947-28931977)
chr6 (86-119)||(31875830-31875863)
chr6 (205-233)||(2100669-2100697)
chr6 (205-233)||(11213471-11213499)
chr6 (205-233)||(13042405-13042433)
chr6 (205-233)||(14997297-14997325)
chr6 (205-233)||(16735853-16735881)
chr6 (205-233)||(23291253-23291281)
chr6 (205-233)||(26716659-26716687)
chr6 (205-233)||(28563324-28563352)
chr6 (208-236)||(28932922-28932950)
chr6 (205-233)||(30965688-30965716)
chr6 (205-233)||(31951489-31951517)
[»] chr5 (30 HSPs)
chr5 (86-207)||(38279359-38279480)
chr5 (100-207)||(42862321-42862428)
chr5 (96-202)||(6309662-6309768)
chr5 (141-207)||(38001927-38001993)
chr5 (96-207)||(42640386-42640497)
chr5 (99-200)||(105519-105620)
chr5 (101-162)||(30916242-30916303)
chr5 (206-247)||(41880071-41880112)
chr5 (208-247)||(932091-932130)
chr5 (208-247)||(25566645-25566684)
chr5 (205-247)||(16521399-16521441)
chr5 (85-162)||(40691855-40691933)
chr5 (208-247)||(35818444-35818483)
chr5 (101-207)||(27027236-27027341)
chr5 (175-207)||(30910706-30910738)
chr5 (86-207)||(537779-537899)
chr5 (205-233)||(1055656-1055684)
chr5 (205-233)||(3020882-3020910)
chr5 (205-233)||(3223433-3223461)
chr5 (205-233)||(9071965-9071993)
chr5 (205-233)||(15526701-15526729)
chr5 (205-233)||(18266349-18266377)
chr5 (205-233)||(19849831-19849859)
chr5 (205-233)||(25631083-25631111)
chr5 (206-238)||(31172566-31172598)
chr5 (205-233)||(34734361-34734389)
chr5 (205-233)||(35306707-35306735)
chr5 (205-233)||(40687957-40687985)
chr5 (201-233)||(41140402-41140434)
chr5 (205-233)||(43586074-43586102)
[»] chr3 (26 HSPs)
chr3 (86-207)||(43277168-43277289)
chr3 (86-208)||(9105044-9105168)
chr3 (99-207)||(11937032-11937139)
chr3 (205-247)||(17916109-17916151)
chr3 (207-247)||(33933397-33933437)
chr3 (207-247)||(27857167-27857207)
chr3 (205-236)||(11961862-11961893)
chr3 (86-207)||(46403725-46403845)
chr3 (207-236)||(11963010-11963039)
chr3 (207-236)||(54718133-54718162)
chr3 (205-233)||(12881232-12881260)
chr3 (205-233)||(12881503-12881531)
chr3 (205-233)||(14904439-14904467)
chr3 (86-130)||(16976354-16976398)
chr3 (205-233)||(19391991-19392019)
chr3 (205-233)||(19914473-19914501)
chr3 (205-233)||(19914760-19914788)
chr3 (205-233)||(21841724-21841752)
chr3 (205-233)||(27766805-27766833)
chr3 (205-233)||(28964150-28964178)
chr3 (205-233)||(31117617-31117645)
chr3 (205-233)||(41281842-41281870)
chr3 (205-233)||(44624514-44624542)
chr3 (205-233)||(44895936-44895964)
chr3 (205-233)||(47423416-47423444)
chr3 (208-236)||(54717165-54717193)
[»] chr1 (31 HSPs)
chr1 (100-203)||(18472094-18472197)
chr1 (100-206)||(6836844-6836951)
chr1 (86-207)||(339066-339186)
chr1 (86-206)||(43406494-43406613)
chr1 (207-247)||(3264244-3264284)
chr1 (99-207)||(44781389-44781496)
chr1 (207-247)||(34867512-34867552)
chr1 (205-245)||(34867726-34867766)
chr1 (205-247)||(29704859-29704901)
chr1 (211-247)||(52363212-52363248)
chr1 (208-247)||(6742856-6742895)
chr1 (99-181)||(16075670-16075752)
chr1 (86-139)||(15973875-15973929)
chr1 (207-236)||(25820838-25820867)
chr1 (210-247)||(41003607-41003644)
chr1 (205-233)||(8774295-8774323)
chr1 (205-233)||(11051893-11051921)
chr1 (205-233)||(11204504-11204532)
chr1 (207-247)||(21931787-21931827)
chr1 (205-233)||(22204302-22204330)
chr1 (205-233)||(23341961-23341989)
chr1 (205-233)||(30288173-30288201)
chr1 (205-233)||(30295158-30295186)
chr1 (205-233)||(37028925-37028953)
chr1 (86-130)||(37666316-37666360)
chr1 (205-233)||(38622400-38622428)
chr1 (207-247)||(41611406-41611445)
chr1 (205-233)||(43914868-43914896)
chr1 (205-233)||(45664428-45664456)
chr1 (205-233)||(45885237-45885265)
chr1 (208-236)||(49227401-49227429)
[»] scaffold0054 (1 HSPs)
scaffold0054 (99-203)||(32252-32356)
[»] chr4 (37 HSPs)
chr4 (86-203)||(2761219-2761338)
chr4 (83-206)||(40459910-40460032)
chr4 (207-246)||(232724-232763)
chr4 (205-247)||(17221330-17221372)
chr4 (207-247)||(41707959-41707999)
chr4 (208-247)||(11159443-11159482)
chr4 (86-139)||(70288-70341)
chr4 (206-247)||(26858618-26858659)
chr4 (215-247)||(21537120-21537152)
chr4 (206-236)||(3065958-3065988)
chr4 (209-247)||(9695097-9695135)
chr4 (165-202)||(28968442-28968479)
chr4 (205-233)||(104197-104225)
chr4 (205-233)||(232979-233007)
chr4 (205-233)||(3770176-3770204)
chr4 (205-233)||(4902444-4902472)
chr4 (205-233)||(7644454-7644482)
chr4 (205-233)||(7705587-7705615)
chr4 (205-233)||(10046224-10046252)
chr4 (205-233)||(12641107-12641135)
chr4 (205-233)||(13021267-13021295)
chr4 (205-233)||(14578728-14578756)
chr4 (205-233)||(23769801-23769829)
chr4 (205-233)||(24415070-24415098)
chr4 (205-233)||(29548468-29548496)
chr4 (205-233)||(31250757-31250785)
chr4 (86-190)||(34827893-34827997)
chr4 (205-233)||(41787046-41787074)
chr4 (207-247)||(41969995-41970035)
chr4 (205-233)||(42672356-42672384)
chr4 (205-233)||(43821986-43822014)
chr4 (205-233)||(47821472-47821500)
chr4 (205-233)||(47854268-47854296)
chr4 (205-233)||(51537427-51537455)
chr4 (205-233)||(52311090-52311118)
chr4 (205-233)||(54556611-54556639)
chr4 (205-233)||(55586905-55586933)
[»] scaffold0067 (1 HSPs)
scaffold0067 (206-247)||(26191-26232)
[»] scaffold0014 (2 HSPs)
scaffold0014 (208-247)||(12688-12727)
scaffold0014 (205-233)||(79275-79303)
[»] scaffold1838 (1 HSPs)
scaffold1838 (170-207)||(1138-1175)
[»] scaffold0657 (1 HSPs)
scaffold0657 (86-207)||(8576-8696)
[»] scaffold0250 (1 HSPs)
scaffold0250 (207-236)||(21837-21866)
[»] scaffold1171 (1 HSPs)
scaffold1171 (205-233)||(816-844)
[»] scaffold0922 (1 HSPs)
scaffold0922 (205-233)||(121-149)
[»] scaffold0777 (1 HSPs)
scaffold0777 (205-233)||(158-186)
[»] scaffold0693 (1 HSPs)
scaffold0693 (205-233)||(4809-4837)
[»] scaffold0606 (1 HSPs)
scaffold0606 (205-233)||(6865-6893)
[»] scaffold0005 (1 HSPs)
scaffold0005 (205-233)||(238619-238647)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 40106880 - 40106760
Alignment:
Q  87 gtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagc 186  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40106880 gtaacgcctcggattttgatccaagacattactcctaattcattctcattttagaaaattactactattttctttttatcatcaataataaattcttagc 40106781  T
Q  187 aaaatctatacaaaattctta 207  Q
    |||||||||||||||||||||    
T  40106780 aaaatctatacaaaattctta 40106760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 48652966 - 48653086
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttag 185  Q
    |||||||||  | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  48652966 tgtaacgccctgaattttgatccaagacattactcctaattcatgctcatttttgaaaattactactattttctttttatcatgaataataaattcttag 48653065  T
Q  186 caaaatctatacaaaattctt 206  Q
    ||||||| |||||||||||||    
T  48653066 caaaatcaatacaaaattctt 48653086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 18366459 - 18366580
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    |||||||||| || |||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  18366459 gtgtaacgccccgaattttgatccaagacattacgcctaaatcattctcattttcgaaaattactactattttctttt-atcattaataataaattctta 18366557  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||||||||||||||||||||    
T  18366558 gcaaaatctatacaaaattctta 18366580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 12910867 - 12910990
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttca-tcatcaataataaattctt 183  Q
    ||||||||| ||||||||  ||||||| ||||| ||||||||||| || ||||| |||||| ||||||||||| |||| | |||||||||||||||||||    
T  12910867 tgtaacgccccggattttagtccaagacattacgcctaattcattttcttttttcgaaaatcactactattttttttttaatcatcaataataaattctt 12910966  T
Q  184 agcaaaatctatacaaaattctta 207  Q
    ||||||||||||||||||||||||    
T  12910967 agcaaaatctatacaaaattctta 12910990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 22078685 - 22078574
Alignment:
Q  96 cggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctat 195  Q
    ||||||| ||||||||| ||| | |||||| |||||||||||| |||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  22078685 cggatttcgatccaagacattgcgcctaatccattctcattttcgaaaatgaccactatttcctttttatcattaataataaattcttagcaaaatctat 22078586  T
Q  196 acaaaattctta 207  Q
    |||||| |||||    
T  22078585 acaaaaatctta 22078574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 21490611 - 21490739
Alignment:
Q  83 atgtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactac-----tattttcttttcatcatcaataataa 177  Q
    |||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||     | |||| |||| ||||| |||||| |    
T  21490611 atgtgtaacgccccagattttgatccaagacattacgcctaaatcattctcattttcgaaaattactaccatttttttttttttttatcattaataat-a 21490709  T
Q  178 attcttagcaaaatctatacaaaattctta 207  Q
    ||||||||||||||||||||||||||||||    
T  21490710 attcttagcaaaatctatacaaaattctta 21490739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 3692350 - 3692237
Alignment:
Q  96 cggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattcttagcaaaatcta 194  Q
    ||||||||||||||||| ||||| ||||| ||||| || ||||| |||||  |||||||| || |||| ||||||||| |||||||||||||||||  ||    
T  3692350 cggattttgatccaagacattacgcctaactcattttcttttttcgaaaaacactactatgttttttttatcatcaatcataaattcttagcaaaacata 3692251  T
Q  195 tacaaaattcttag 208  Q
    ||||||||||||||    
T  3692250 tacaaaattcttag 3692237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 18938969 - 18939009
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18938969 aggcttaattgcacttttggacccctaactaatttaaatac 18939009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 49169490 - 49169562
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactatttt 157  Q
    ||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||| || ||||||||    
T  49169490 tgtaacgcctcggattttggtccaagacattacgcctaaatcattctcatttttagaaaatcacaactatttt 49169562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 32555332 - 32555370
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaa 243  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32555332 ttaggcttaattgcacttttggacccctaactaatttaa 32555370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 13163478 - 13163519
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaattctt 206  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  13163478 tcatcaataataaattcttagcaaaacctatacaaaattctt 13163519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 387983 - 388022
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  387983 ggcttaattgcacttttggacccctaattaatttaaatac 388022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 25683901 - 25683940
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  25683901 ggcttaattacacttttggacccctaactaatttaaatac 25683940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 15873103 - 15873223
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  ||| | ||||| ||| || ||||| |    
T  15873103 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactattta-tttacttcatctatattatattct-a 15873200  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||| ||||||||||||||||    
T  15873201 gcaaaacctatacaaaattctta 15873223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Complemental strand, 30086619 - 30086588
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||||    
T  30086619 ttaggcttaattgcacttttggacccctaact 30086588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 12195971 - 12196013
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaattctta 207  Q
    |||| |||||||||||||||||||| |||||||||| ||||||    
T  12195971 tcataaataataaattcttagcaaattctatacaaagttctta 12196013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 30085620 - 30085649
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  30085620 aggcttaattgcacttttggacccctaact 30085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 38974725 - 38974692
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatt 240  Q
    |||||||||||||||||||| |||||||||||||    
T  38974725 aggcttaattgcacttttggccccctaactaatt 38974692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 10356414 - 10356386
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  10356414 ttaggcttaattgcacttttggaccccta 10356386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 10715838 - 10715866
Alignment:
Q  208 ggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||    
T  10715838 ggcttaattgcacttttggacccctaact 10715866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 18363292 - 18363320
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  18363292 ttaggcttaattgcacttttggaccccta 18363320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 18852809 - 18852781
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  18852809 ttaggcttaattgcacttttggaccccta 18852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 19778570 - 19778542
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  19778570 ttaggcttaattgcacttttggaccccta 19778542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25982986 - 25983014
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  25982986 ttaggcttaattgcacttttggaccccta 25983014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25986922 - 25986950
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  25986922 ttaggcttaattgcacttttggaccccta 25986950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 35121729 - 35121701
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  35121729 ttaggcttaattgcacttttggaccccta 35121701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 41957597 - 41957718
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttag 185  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41957597 tgtaacgccttggattttgattcaagacattactcctaattcattttcattttcgaaaattactactattttcttttcatcatcaataataaattcttag 41957696  T
Q  186 caaaatctatacaaaattctta 207  Q
    ||||||||||||||||||||||    
T  41957697 caaaatctatacaaaattctta 41957718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 35841207 - 35841087
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttag 185  Q
    |||||| || || |||||| ||||||| ||||| | |||| ||||||||||||| |||| |||||||||||| | || ||||||||||||||||| ||||    
T  35841207 tgtaactccccgaattttggtccaagacattacgcttaatacattctcatttttcaaaaatactactatttt-tgtttatcatcaataataaattattag 35841109  T
Q  186 caaaatctatacaaaattctta 207  Q
     ||||  |||||||||||||||    
T  35841108 aaaaacttatacaaaattctta 35841087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 26162632 - 26162537
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattct 182  Q
    ||||||||||  |||||||||| ||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||   | ||||||||||||||||    
T  26162632 gtgtaacgccctggattttgattcaagacattacgcctaaatcattctcttttttcgaaaattactactattttcttt---ttatcaataataaattct 26162537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 18552999 - 18553041
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18552999 ttaggcttaattgcacttttggacccctaactaatttaaatac 18553041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 35735783 - 35735745
Alignment:
Q  209 gcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35735783 gcttaattgcacttttggacccctaactaatttaaatac 35735745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 44437181 - 44437060
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttg-aaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| |||||||||||  |||| ||||  ||| ||||||| ||||||||  |||| | |||| ||||| |||| ||||||||||||||||| |||    
T  44437181 tgtaacgccccggattttgattgaagacattatacctgattcattttcatttttctaaaaatgctaccattttttttt-atcatcaataataaattatta 44437083  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    | ||||  |||||||||||||||    
T  44437082 gaaaaacttatacaaaattctta 44437060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 6745025 - 6745061
Alignment:
Q  211 ttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  6745025 ttaattgcacttttggacccctaactaatttaaatac 6745061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 44807099 - 44807141
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  44807099 ttaggcttaattgcacttttggccccctaactaattaaaatac 44807141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 40840648 - 40840707
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaa 144  Q
    |||||||||| ||||||||| ||||| | ||||| ||||||||||| |||||||| ||||    
T  40840648 gtgtaacgccccggattttggtccaaaacattacacctaattcattttcatttttcaaaa 40840707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 43657489 - 43657520
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||||    
T  43657489 ttaggcttaattgcacttttggacccctaact 43657520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 8038063 - 8038101
Alignment:
Q  209 gcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  8038063 gcttaattgcacttttggtcccctaactaattaaaatac 8038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 6161814 - 6161737
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttctttt 162  Q
    ||||||||| || |||||| ||||||| ||||| ||||| | ||||| |||||| |||||| ||||||||||| ||||    
T  6161814 tgtaacgccccgaattttggtccaagacattacgcctaaattattcttatttttagaaaatcactactattttttttt 6161737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 43658495 - 43658466
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  43658495 aggcttaattgcacttttggacccctaact 43658466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 15187925 - 15187953
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  15187925 ttaggcttaattgcacttttggaccccta 15187953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 20057257 - 20057222
Alignment:
Q  211 ttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||| |||||||||||||||||||||||||||    
T  20057257 ttaattgca-ttttggacccctaactaatttaaatac 20057222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 30845876 - 30845848
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  30845876 ttaggcttaattgcacttttggaccccta 30845848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 36226731 - 36226703
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  36226731 ttaggcttaattgcacttttggaccccta 36226703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 36801679 - 36801647
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaa 238  Q
    |||||||||||||||||||||||||||| ||||    
T  36801679 taggcttaattgcacttttggacccctatctaa 36801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 37953371 - 37953399
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  37953371 ttaggcttaattgcacttttggaccccta 37953399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 42267774 - 42267746
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  42267774 ttaggcttaattgcacttttggaccccta 42267746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 45106432 - 45106460
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  45106432 ttaggcttaattgcacttttggaccccta 45106460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 40728581 - 40728689
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctataca 198  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40728581 attttgatccaagacattactcctaattcattctcattttcgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctataca 40728680  T
Q  199 aaattctta 207  Q
    |||||||||    
T  40728681 aaattctta 40728689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 41339395 - 41339512
Alignment:
Q  90 acgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaa 189  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||| |||    
T  41339395 acgccccggattttgatccaagacattacgcctaattcattctcattttcaaaaattactactattttctttttatcatcaataatacattcttagtaaa 41339494  T
Q  190 atctatacaaaattctta 207  Q
    ||||||||||||||||||    
T  41339495 atctatacaaaattctta 41339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 35669969 - 35670026
Alignment:
Q  149 tactattttcttttcatcatcaataataaattcttagcaaaatctatacaaaattctt 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35669969 tactattttctttttatcatcaataataaattcttagcaaaatctatacaaagttctt 35670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 7538553 - 7538512
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7538553 taggcttaattgcacttttggacccctaactaatttaaatac 7538512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 20494620 - 20494579
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20494620 taggcttaattgcacttttggacccctaactaatttaaatac 20494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 35698882 - 35698924
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  35698882 ttaggtttaattgcacttttggacccctaactaatttaaatac 35698924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 40448559 - 40448439
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  ||||||||||||  |||| |    
T  40448559 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatcaataatatgttct-a 40448462  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||||||||||||||||||||    
T  40448461 gcaaaatctatacaaaattctta 40448439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 28266310 - 28266398
Alignment:
Q  120 cctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatacaaaattctta 207  Q
    |||||||||||||||||||| |||||  |||| | ||||  ||| |||||||||||||| || ||||||||| |||||||| |||||||    
T  28266310 cctaattcattctcatttttcgaaaaacactattgtttttattttatcatcaataataacttgttagcaaaacctatacaagattctta 28266398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 35669623 - 35669687
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattacta 150  Q
    |||||||||  |||||||||| ||||| ||||| ||||||||||||||||||| ||||| |||||    
T  35669623 tgtaacgccctggattttgattcaagacattacgcctaattcattctcattttcgaaaagtacta 35669687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 18291962 - 18292004
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaattctta 207  Q
    ||||||||| |||||||||||||||||||||||||| ||||||    
T  18291962 tcatcaatagtaaattcttagcaaaatctatacaaagttctta 18292004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 44789506 - 44789469
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaat 202  Q
    |||||||||||||||||||||||||| |||||||||||    
T  44789506 tcatcaataataaattcttagcaaaacctatacaaaat 44789469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 29271559 - 29271523
Alignment:
Q  164 atcatcaataataaattcttagcaaaatctatacaaa 200  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29271559 atcatcaataataaattcttagcaaaacctatacaaa 29271523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 7537410 - 7537441
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||||    
T  7537410 ttaggcttaattgcacttttggacccctaact 7537441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 32735250 - 32735371
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctt 183  Q
    |||||||||| || |||||| ||||||| ||| | ||||| ||||| || |||| ||||||  ||||||||||  || |  |||||||||||| |||||     
T  32735250 gtgtaacgccccgaattttggtccaagacatttcgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatcaataatatattct- 32735347  T
Q  184 agcaaaatctatacaaaattctta 207  Q
    ||||||| ||||||||||||||||    
T  32735348 agcaaaacctatacaaaattctta 32735371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 19256617 - 19256658
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  19256617 ttaggcttaattgtacttttggacccct-actaatttaaatac 19256658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 15977200 - 15977233
Alignment:
Q  200 aattcttaggcttaattgcacttttggaccccta 233  Q
    |||| |||||||||||||||||||||||||||||    
T  15977200 aatttttaggcttaattgcacttttggaccccta 15977233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 34397061 - 34397102
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaattctt 206  Q
    ||||||||||||| ||||||| |||||||||| |||||||||    
T  34397061 tcatcaataataagttcttagtaaaatctatataaaattctt 34397102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 3263032 - 3263060
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  3263032 ttaggcttaattgcacttttggaccccta 3263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 9715165 - 9715137
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  9715165 ttaggcttaattgcacttttggaccccta 9715137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 20436055 - 20436083
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  20436055 ttaggcttaattgcacttttggaccccta 20436083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 24895227 - 24895199
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  24895227 ttaggcttaattgcacttttggaccccta 24895199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25429919 - 25429947
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  25429919 ttaggcttaattgcacttttggaccccta 25429947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 13772542 - 13772666
Alignment:
Q  82 gatgtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattc 181  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  13772542 gatgtgtaacgccccagattttgatccaagacattactcctaattcatgctcattttcaaaaattactactattttctttttatcatcaataataaattc 13772641  T
Q  182 ttagcaaaatctatacaaaattctt 206  Q
    |||||||||||||||||||||||||    
T  13772642 ttagcaaaatctatacaaaattctt 13772666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 10750754 - 10750875
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    |||||||||| |  ||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  10750754 gtgtaacgccccaaattttaatccaagacattactccaaattcatgctcattttcgaaaattactactattttctttttatcatcaataataaattctta 10750853  T
Q  185 gcaaaatctatacaaaattctt 206  Q
    ||||||| ||||||||||||||    
T  10750854 gcaaaatttatacaaaattctt 10750875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 24164862 - 24164743
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||||||||||| ||||  ||||||||||| ||||||||  |||| | | |||||||| |||| |||||||||||||||||||||    
T  24164862 tgtaacgccccggattttgatccaagacattatgcctaattcattttcatttttctaaaaatgccactatttt-tttttatcatcaataataaattctta 24164764  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    ||||||   ||||||||||||||    
T  24164763 gcaaaa--catacaaaattctta 24164743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 26171236 - 26171278
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  26171236 ttaggcttaattgcacttttggacccgtaactaatttaaatac 26171278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 7324938 - 7324897
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  7324938 taggcttaattgcacttttggacccctaattaatttaaatac 7324897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 23259754 - 23259877
Alignment:
Q  83 atgtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattc 181  Q
    |||||||||||| |||||||||||| |||| ||||| ||||| ||||| |  |||| ||||||  ||||||||||  || |  |||||||||||| ||||    
T  23259754 atgtgtaacgccccggattttgatctaagacattacgcctaaatcatttttcttttctgaaaaacactactatttatttatt-tcatcaataatatattc 23259852  T
Q  182 ttagcaaaatctatacaaaattctta 207  Q
    | ||||||| ||||||||||||||||    
T  23259853 t-agcaaaacctatacaaaattctta 23259877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 32449392 - 32449513
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctt 183  Q
    |||||||||| ||||||||||||||||| ||||| ||||| ||||| || |||| ||||||  ||||||| ||| |||   |||||||||||| |||| |    
T  32449392 gtgtaacgccccggattttgatccaagacattacgcctaaatcattttccttttctgaaaaacactacta-tttatttatttcatcaataatatattc-t 32449489  T
Q  184 agcaaaatctatacaaaattctta 207  Q
    || ||||  |||||||||||||||    
T  32449490 agaaaaacttatacaaaattctta 32449513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 929207 - 929246
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  929207 ggcttaattgcacttttggccccctaactaattaaaatac 929246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 21003365 - 21003396
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||||    
T  21003365 ttaggcttaattgcacttttggacccctaact 21003396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Original strand, 26181901 - 26181936
Alignment:
Q  167 atcaataataaattcttagcaaaatctatacaaaat 202  Q
    |||||||||||||||||||||||| |||||||||||    
T  26181901 atcaataataaattcttagcaaaacctatacaaaat 26181936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 28931947 - 28931977
Alignment:
Q  206 taggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||||    
T  28931947 taggcttaattgcacttttggacccctaact 28931977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 31875863 - 31875830
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattact 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  31875863 tgtaacgcctcggattttgatccaagacattact 31875830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 2100697 - 2100669
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  2100697 ttaggcttaattgcacttttggaccccta 2100669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 11213499 - 11213471
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  11213499 ttaggcttaattgcacttttggaccccta 11213471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 13042405 - 13042433
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  13042405 ttaggcttaattgcacttttggaccccta 13042433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 14997325 - 14997297
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  14997325 ttaggcttaattgcacttttggaccccta 14997297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 16735881 - 16735853
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  16735881 ttaggcttaattgcacttttggaccccta 16735853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 23291253 - 23291281
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  23291253 ttaggcttaattgcacttttggaccccta 23291281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 26716687 - 26716659
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  26716687 ttaggcttaattgcacttttggaccccta 26716659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 28563324 - 28563352
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  28563324 ttaggcttaattgcacttttggaccccta 28563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 28932950 - 28932922
Alignment:
Q  208 ggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||    
T  28932950 ggcttaattgcacttttggacccctaact 28932922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 30965688 - 30965716
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  30965688 ttaggcttaattgcacttttggaccccta 30965716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 31951517 - 31951489
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  31951517 ttaggcttaattgcacttttggaccccta 31951489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 38279480 - 38279359
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttag 185  Q
    |||||||||| |||||||||||| ||| ||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38279480 tgtaacgccttggattttgatcctagacattacgcctaattcattcacattttcgaaaattactactattttctttttatcattaataataaattcttag 38279381  T
Q  186 caaaatctatacaaaattctta 207  Q
    ||||||||||||||||||||||    
T  38279380 caaaatctatacaaaattctta 38279359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 42862428 - 42862321
Alignment:
Q  100 ttttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatacaa 199  Q
    |||| |||||||| ||||  ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  42862428 tttttatccaagacattatgcctaattcattctcattttcgaaaattactactattttctttttatcattaataataaattcttagcaaaatctatacaa 42862329  T
Q  200 aattctta 207  Q
    ||||||||    
T  42862328 aattctta 42862321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 6309768 - 6309662
Alignment:
Q  96 cggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctat 195  Q
    |||||||||||| |||| ||||| |||||||||||||||||||  |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6309768 cggattttgatctaagacattacgcctaattcattctcattttcaaaaatttctactattttctttttatcattaataataaattcttagcaaaatctat 6309669  T
Q  196 acaaaat 202  Q
    |||||||    
T  6309668 acaaaat 6309662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 38001993 - 38001927
Alignment:
Q  141 aaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatacaaaattctta 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38001993 aaaattactattattttcttttcatcatcaataataaattcttagcaaaatctatacaaaattctta 38001927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 42640497 - 42640386
Alignment:
Q  96 cggattttgatccaagatattactcctaattcattctcatttttgaaaatt-actactattttcttttcatcatcaataataaattcttagcaaaatcta 194  Q
    ||||||||  ||||||| ||||  ||||||||||| |||||||| |||| | ||||||||||| | || ||||||||||||||||||||||||||| |||    
T  42640497 cggattttagtccaagacattatacctaattcattttcatttttcaaaaatcactactattttatatt-atcatcaataataaattcttagcaaaaccta 42640399  T
Q  195 tacaaaattctta 207  Q
    |||||||||||||    
T  42640398 tacaaaattctta 42640386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 105620 - 105519
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatac 197  Q
    |||||||||||||| |||| | |||||||||| |||| ||| |||||  ||||||| ||| |||| |||||||||||||||||||||| |||||||||||    
T  105620 attttgatccaagacattatttctaattcattttcatgtttagaaaaacactactaatttttttt-atcatcaataataaattcttagtaaaatctatac 105522  T
Q  198 aaa 200  Q
    |||    
T  105521 aaa 105519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 30916303 - 30916242
Alignment:
Q  101 tttgatccaagatattactcctaattcattctcatttttgaaaattactactattttctttt 162  Q
    |||||||||||| ||||| ||||||||| |||||||||  ||||||||||||||||||||||    
T  30916303 tttgatccaagacattacgcctaattcactctcattttcaaaaattactactattttctttt 30916242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 41880071 - 41880112
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41880071 taggcttaattgcacttttggacccctaactaatttaaatac 41880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 932130 - 932091
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  932130 ggcttaattgcacttttggacccctaactaatttaaatac 932091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 25566645 - 25566684
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25566645 ggcttaattgcacttttggacccctaactaatttaaatac 25566684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 16521441 - 16521399
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  16521441 ttaggtttaattgcacttttggacccctaactaatttaaatac 16521399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 40691933 - 40691855
Alignment:
Q  85 gtgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttctttt 162  Q
    |||||||||| ||||||||||||||||| ||||| ||||| | ||| |||||||| |||||| ||||||||||| ||||    
T  40691933 gtgtaacgccccggattttgatccaagacattacgcctaaattattttcatttttagaaaatcactactattttttttt 40691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 35818483 - 35818444
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  35818483 ggcttaattgcacttttggacccctatctaatttaaatac 35818444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 27027341 - 27027236
Alignment:
Q  101 tttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatacaaa 200  Q
    |||||||||||  ||||| ||||||| ||| || | || |||||| | | ||||||| |||| ||||||||||||||||| |||| ||||  ||||||||    
T  27027341 tttgatccaaggcattacgcctaatttattttcttattcgaaaatcatttctattttttttt-atcatcaataataaattattaggaaaacttatacaaa 27027243  T
Q  201 attctta 207  Q
    |||||||    
T  27027242 attctta 27027236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 30910738 - 30910706
Alignment:
Q  175 taaattcttagcaaaatctatacaaaattctta 207  Q
    |||||||||||||||||||||||||||||||||    
T  30910738 taaattcttagcaaaatctatacaaaattctta 30910706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 537899 - 537779
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  ||||| ||| || ||||| |    
T  537899 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-a 537802  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||| ||||||||||||||||    
T  537801 gcaaaacctatacaaaattctta 537779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 1055684 - 1055656
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  1055684 ttaggcttaattgcacttttggaccccta 1055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 3020910 - 3020882
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  3020910 ttaggcttaattgcacttttggaccccta 3020882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 3223433 - 3223461
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  3223433 ttaggcttaattgcacttttggaccccta 3223461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 9071965 - 9071993
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  9071965 ttaggcttaattgcacttttggaccccta 9071993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 15526701 - 15526729
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  15526701 ttaggcttaattgcacttttggaccccta 15526729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 18266349 - 18266377
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  18266349 ttaggcttaattgcacttttggaccccta 18266377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 19849859 - 19849831
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  19849859 ttaggcttaattgcacttttggaccccta 19849831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 25631083 - 25631111
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  25631083 ttaggcttaattgcacttttggaccccta 25631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 31172566 - 31172598
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaa 238  Q
    |||||||||||||||||||||||||||| ||||    
T  31172566 taggcttaattgcacttttggacccctatctaa 31172598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 34734389 - 34734361
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  34734389 ttaggcttaattgcacttttggaccccta 34734361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 35306707 - 35306735
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  35306707 ttaggcttaattgcacttttggaccccta 35306735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 40687985 - 40687957
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  40687985 ttaggcttaattgcacttttggaccccta 40687957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 41140434 - 41140402
Alignment:
Q  201 attcttaggcttaattgcacttttggaccccta 233  Q
    ||||| |||||||||||||||||||||||||||    
T  41140434 attctaaggcttaattgcacttttggaccccta 41140402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 43586102 - 43586074
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  43586102 ttaggcttaattgcacttttggaccccta 43586074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 43277168 - 43277289
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttag 185  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||| ||||  |||||||||||||||||||||    
T  43277168 tgtaacgcctcagattttgatccaatacattactcctaattcattctcattttcaaaaattactactattttttttttttcatcaataataaattcttag 43277267  T
Q  186 caaaatctatacaaaattctta 207  Q
    ||||||||||||||||||||||    
T  43277268 caaaatctatacaaaattctta 43277289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 9105168 - 9105044
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttg--aaaattactactattttcttttcatcatcaataataaattctt 183  Q
    ||||||||| | ||||||| ||||||| ||||| ||| |||||||| |||||||   |||| ||||||||||||||||| ||||||||||||||||||||    
T  9105168 tgtaacgccccagattttggtccaagacattacgccttattcattcacatttttcgaaaaactactactattttctttttatcatcaataataaattctt 9105069  T
Q  184 agcaaaatctatacaaaattcttag 208  Q
    |||||||||||||||||||||||||    
T  9105068 agcaaaatctatacaaaattcttag 9105044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 11937032 - 11937139
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctataca 198  Q
    ||||| |||||||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  11937032 attttaatccaagacattacgcctaaatcattcttattttcgaaaattactactattttctttttatcattaataat-aattcttagcaaaatctataca 11937130  T
Q  199 aaattctta 207  Q
    |||||||||    
T  11937131 aaattctta 11937139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 17916109 - 17916151
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17916109 ttaggcttaattgcacttttggacccctaactaatttaaatac 17916151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 33933397 - 33933437
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33933397 aggcttaattgcacttttggacccctaactaatttaaatac 33933437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 27857167 - 27857207
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  27857167 aggcttaattgtacttttggagccctaactaatttaaatac 27857207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 11961862 - 11961893
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||||    
T  11961862 ttaggcttaattgcacttttggacccctaact 11961893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 46403725 - 46403845
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| | ||||||||||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  ||||| ||| || ||||| |    
T  46403725 tgtaacgccccagattttgatccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-a 46403822  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||| ||||||||||||||||    
T  46403823 gcaaaacctatacaaaattctta 46403845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 11963039 - 11963010
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  11963039 aggcttaattgcacttttggacccctaact 11963010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 54718162 - 54718133
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  54718162 aggcttaattgcacttttggacccctaact 54718133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 12881232 - 12881260
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  12881232 ttaggcttaattgcacttttggaccccta 12881260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 12881531 - 12881503
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  12881531 ttaggcttaattgcacttttggaccccta 12881503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 14904439 - 14904467
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  14904439 ttaggcttaattgcacttttggaccccta 14904467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 16976398 - 16976354
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcatt 130  Q
    ||||||||| ||||||||| ||||||| ||||||||||| |||||    
T  16976398 tgtaacgccccggattttggtccaagacattactcctaaatcatt 16976354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 19392019 - 19391991
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  19392019 ttaggcttaattgcacttttggaccccta 19391991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 19914473 - 19914501
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  19914473 ttaggcttaattgcacttttggaccccta 19914501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 19914788 - 19914760
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  19914788 ttaggcttaattgcacttttggaccccta 19914760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 21841724 - 21841752
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  21841724 ttaggcttaattgcacttttggaccccta 21841752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 27766833 - 27766805
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  27766833 ttaggcttaattgcacttttggaccccta 27766805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 28964150 - 28964178
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  28964150 ttaggcttaattgcacttttggaccccta 28964178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 31117617 - 31117645
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  31117617 ttaggcttaattgcacttttggaccccta 31117645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 41281842 - 41281870
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  41281842 ttaggcttaattgcacttttggaccccta 41281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 44624542 - 44624514
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  44624542 ttaggcttaattgcacttttggaccccta 44624514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 44895964 - 44895936
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  44895964 ttaggcttaattgcacttttggaccccta 44895936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 47423444 - 47423416
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  47423444 ttaggcttaattgcacttttggaccccta 47423416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Original strand, 54717165 - 54717193
Alignment:
Q  208 ggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||    
T  54717165 ggcttaattgcacttttggacccctaact 54717193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 18472094 - 18472197
Alignment:
Q  100 ttttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatacaa 199  Q
    ||||||| ||||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||    
T  18472094 ttttgatacaagacattatgcctaattcattctcattttttaaaattactactattttctttttatcattaaaaataaattcttagcaaaaactatacaa 18472193  T
Q  200 aatt 203  Q
    ||||    
T  18472194 aatt 18472197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 6836951 - 6836844
Alignment:
Q  100 ttttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctataca 198  Q
    ||||||||||||| ||||| ||||| ||||| || |||| ||||||  |||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6836951 ttttgatccaagacattacgcctaaatcattttctttttctgaaaaaaactactattttctttttatcatcaataataaattcttaacaaaatctataca 6836852  T
Q  199 aaattctt 206  Q
    ||||||||    
T  6836851 aaattctt 6836844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 339186 - 339066
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  |||||||||||| ||||| |    
T  339186 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatcaataatatattct-a 339089  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||||||||||||||||||||    
T  339088 gcaaaatctatacaaaattctta 339066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 43406494 - 43406613
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  |||||||||||| ||||| |    
T  43406494 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatcaataatatattct-a 43406591  T
Q  185 gcaaaatctatacaaaattctt 206  Q
    ||||||||||||||||||||||    
T  43406592 gcaaaatctatacaaaattctt 43406613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 3264284 - 3264244
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3264284 aggcttaattgcacttttggacccctaactaatttaaatac 3264244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 44781389 - 44781496
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcatttttg-aaaattactactattttcttttcatcatcaataataaattcttagcaaaatctatac 197  Q
    |||||||||||| | ||||| ||||||||||| ||||||||  ||||   || ||||||| |||  ||||||||||||||||||||| ||||| ||||||    
T  44781389 attttgatccaaaacattacgcctaattcattttcatttttctaaaagcgctgctatttttttt--atcatcaataataaattcttaacaaaacctatac 44781486  T
Q  198 aaaattctta 207  Q
    | ||||||||    
T  44781487 acaattctta 44781496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 34867512 - 34867552
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34867512 aggcttaattgcacttttggacccctaattaatttaaatac 34867552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 34867766 - 34867726
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaat 245  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  34867766 ttaggtttaattgcacttttggacccctaactaatttaaat 34867726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 29704901 - 29704859
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  29704901 ttaggtttaattgcacttttggactcctaactaatttaaatac 29704859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 52363212 - 52363248
Alignment:
Q  211 ttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52363212 ttaattgcacttttgaacccctaactaatttaaatac 52363248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 6742856 - 6742895
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  6742856 ggcttaattgcacttttggacccctaattaattaaaatac 6742895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 16075752 - 16075670
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcattttt-gaaaattactactattttcttttcatcatcaataataaattc 181  Q
    |||||| || |||| ||||| ||||||||||| |||||||| |||||| |||| |||||| ||||| |||| ||||||||||||    
T  16075752 attttggtctaagacattacgcctaattcattttcatttttagaaaatcactattatttt-ttttcctcattaataataaattc 16075670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 15973929 - 15973875
Alignment:
Q  86 tgtaacgcctcggattttg-atccaagatattactcctaattcattctcattttt 139  Q
    ||||||||| ||||||||  |||||||| ||||| ||||||||||||||||||||    
T  15973929 tgtaacgccccggattttttatccaagacattacgcctaattcattctcattttt 15973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 25820867 - 25820838
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  25820867 aggcttaattgcacttttggacccctaact 25820838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 41003607 - 41003644
Alignment:
Q  210 cttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  41003607 cttaattgcacttttggccccctaactaattaaaatac 41003644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 8774295 - 8774323
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  8774295 ttaggcttaattgcacttttggaccccta 8774323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 11051893 - 11051921
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  11051893 ttaggcttaattgcacttttggaccccta 11051921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 11204504 - 11204532
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  11204504 ttaggcttaattgcacttttggaccccta 11204532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 21931787 - 21931827
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  21931787 aggcttaattgcacttttgaccccctaactaattaaaatac 21931827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 22204302 - 22204330
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  22204302 ttaggcttaattgcacttttggaccccta 22204330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 23341961 - 23341989
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  23341961 ttaggcttaattgcacttttggaccccta 23341989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 30288173 - 30288201
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  30288173 ttaggcttaattgcacttttggaccccta 30288201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 30295186 - 30295158
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  30295186 ttaggcttaattgcacttttggaccccta 30295158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 37028925 - 37028953
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  37028925 ttaggcttaattgcacttttggaccccta 37028953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 37666316 - 37666360
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcatt 130  Q
    ||||||||| ||||||||||||||||| ||||| ||||| |||||    
T  37666316 tgtaacgccccggattttgatccaagacattacgcctaaatcatt 37666360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 38622400 - 38622428
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  38622400 ttaggcttaattgcacttttggaccccta 38622428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 41611445 - 41611406
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  41611445 aggcttaattgcacttttgg-cccctaactaattaaaatac 41611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 43914896 - 43914868
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  43914896 ttaggcttaattgcacttttggaccccta 43914868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 45664456 - 45664428
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  45664456 ttaggcttaattgcacttttggaccccta 45664428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 45885265 - 45885237
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  45885265 ttaggcttaattgcacttttggaccccta 45885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 49227429 - 49227401
Alignment:
Q  208 ggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||    
T  49227429 ggcttaattgcacttttggacccctaact 49227401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 32356 - 32252
Alignment:
Q  99 attttgatccaagatattactcctaattcattctcatttttgaaaattactactattttcttttcatcatcaataataaattcttagcaaaatctataca 198  Q
    ||||||||| |||||||||| ||||| | ||| |||||||| ||||  |||||||||||  ||| ||||||||||||||||||||| ||||| |||||||    
T  32356 attttgatcgaagatattacgcctaaattattttcatttttcaaaaacactactatttttgttttatcatcaataataaattcttaacaaaacctataca 32257  T
Q  199 aaatt 203  Q
    |||||    
T  32256 aaatt 32252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 2761219 - 2761338
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttgaaaatta----ctactattttcttttcatcatcaataataaattc 181  Q
    |||||||| ||| ||||||||| |||| |||||  |||||||||| ||||||||  |||  |    |||||||||| |||| ||||||||||||||||||    
T  2761219 tgtaacgcttcgaattttgatc-aagacattacgtctaattcattttcatttttctaaaaaaaacgctactattttatttt-atcatcaataataaattc 2761316  T
Q  182 ttagcaaaatctatacaaaatt 203  Q
    ||||||||||||||||||||||    
T  2761317 ttagcaaaatctatacaaaatt 2761338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 40460032 - 40459910
Alignment:
Q  83 atgtgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattc 181  Q
    |||||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  |||||||||||| ||||    
T  40460032 atgtgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatcaataatatattc 40459934  T
Q  182 ttagcaaaatctatacaaaattctt 206  Q
    | |||||||||||||||||||||||    
T  40459933 t-agcaaaatctatacaaaattctt 40459910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 232724 - 232763
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaata 246  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  232724 aggcttaattgcacttttggacccctaactaatttaaata 232763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 17221330 - 17221372
Alignment:
Q  205 ttaggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  17221330 ttaggcttaattgcacttttgaacccctaactaatttaaatac 17221372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 41707999 - 41707959
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  41707999 aggcttaattgcacttttggatccctaactaatttaaatac 41707959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 11159443 - 11159482
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  11159443 ggcttaattgtacttttggacccctaactaatttaaatac 11159482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 70341 - 70288
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcattttt 139  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  70341 tgtaacgccccggattttggtccaagacattacgcctaaatcattctcattttt 70288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 26858659 - 26858618
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  26858659 taggcttaattgcacttttggccccctaactaattaaaatac 26858618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 21537152 - 21537120
Alignment:
Q  215 ttgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||||||||||||||||    
T  21537152 ttgcacttttggacccctaactaatttaaatac 21537120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 3065958 - 3065988
Alignment:
Q  206 taggcttaattgcacttttggacccctaact 236  Q
    |||||||||||||||||||||||||||||||    
T  3065958 taggcttaattgcacttttggacccctaact 3065988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 9695097 - 9695135
Alignment:
Q  209 gcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  9695097 gcttaattgcacttttggccccctaactaattaaaatac 9695135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 28968442 - 28968479
Alignment:
Q  165 tcatcaataataaattcttagcaaaatctatacaaaat 202  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  28968442 tcatcgataataaattcttagcaaaacctatacaaaat 28968479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 104197 - 104225
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  104197 ttaggcttaattgcacttttggaccccta 104225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 233007 - 232979
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  233007 ttaggcttaattgcacttttggaccccta 232979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 3770176 - 3770204
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  3770176 ttaggcttaattgcacttttggaccccta 3770204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 4902472 - 4902444
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  4902472 ttaggcttaattgcacttttggaccccta 4902444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 7644454 - 7644482
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  7644454 ttaggcttaattgcacttttggaccccta 7644482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 7705587 - 7705615
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  7705587 ttaggcttaattgcacttttggaccccta 7705615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 10046252 - 10046224
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  10046252 ttaggcttaattgcacttttggaccccta 10046224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 12641135 - 12641107
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  12641135 ttaggcttaattgcacttttggaccccta 12641107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 13021295 - 13021267
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  13021295 ttaggcttaattgcacttttggaccccta 13021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 14578756 - 14578728
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  14578756 ttaggcttaattgcacttttggaccccta 14578728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 23769801 - 23769829
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  23769801 ttaggcttaattgcacttttggaccccta 23769829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 24415070 - 24415098
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  24415070 ttaggcttaattgcacttttggaccccta 24415098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 29548496 - 29548468
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  29548496 ttaggcttaattgcacttttggaccccta 29548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 31250785 - 31250757
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  31250785 ttaggcttaattgcacttttggaccccta 31250757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 34827893 - 34827997
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttttg--aaaattactactattttcttttcatcatcaataataaattctt 183  Q
    ||||||| ||| ||||||||| ||||| ||||| |  |||||||| ||||||||   ||||  ||||||||||| |||||  |||| |||||||||||||    
T  34827893 tgtaacgtctcagattttgattcaagacattacgctaaattcattttcattttttgaaaaaacactactatttttttttc--catcgataataaattctt 34827990  T
Q  184 agcaaaa 190  Q
    | |||||    
T  34827991 aacaaaa 34827997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 41787046 - 41787074
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  41787046 ttaggcttaattgcacttttggaccccta 41787074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 41969995 - 41970035
Alignment:
Q  207 aggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||| |||||||||||| ||||||||||||| ||||||    
T  41969995 aggcttagttgcacttttggccccctaactaattaaaatac 41970035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 42672384 - 42672356
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  42672384 ttaggcttaattgcacttttggaccccta 42672356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 43822014 - 43821986
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  43822014 ttaggcttaattgcacttttggaccccta 43821986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 47821472 - 47821500
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  47821472 ttaggcttaattgcacttttggaccccta 47821500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 47854296 - 47854268
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  47854296 ttaggcttaattgcacttttggaccccta 47854268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 51537427 - 51537455
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  51537427 ttaggcttaattgcacttttggaccccta 51537455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 52311118 - 52311090
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  52311118 ttaggcttaattgcacttttggaccccta 52311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 54556611 - 54556639
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  54556611 ttaggcttaattgcacttttggaccccta 54556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 55586933 - 55586905
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  55586933 ttaggcttaattgcacttttggaccccta 55586905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 26191 - 26232
Alignment:
Q  206 taggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26191 taggcttaattgcacttttggacccctaactaatttaaatac 26232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 12688 - 12727
Alignment:
Q  208 ggcttaattgcacttttggacccctaactaatttaaatac 247  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12688 ggcttaattgcacttttggatccctaactaatttaaatac 12727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 79303 - 79275
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  79303 ttaggcttaattgcacttttggaccccta 79275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 1175 - 1138
Alignment:
Q  170 aataataaattcttagcaaaatctatacaaaattctta 207  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1175 aataataaattcttaacaaaatctatacaaaattctta 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 8576 - 8696
Alignment:
Q  86 tgtaacgcctcggattttgatccaagatattactcctaattcattctcatttt-tgaaaattactactattttcttttcatcatcaataataaattctta 184  Q
    ||||||||| ||||||||| ||||||| ||||| ||||| ||||| || |||| ||||||  ||||||||||  || |  ||||| ||| || ||||| |    
T  8576 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-a 8673  T
Q  185 gcaaaatctatacaaaattctta 207  Q
    |||||| ||||||||||||||||    
T  8674 gcaaaacctatacaaaattctta 8696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 21837 - 21866
Alignment:
Q  207 aggcttaattgcacttttggacccctaact 236  Q
    ||||||||||||||||||||||||||||||    
T  21837 aggcttaattgcacttttggacccctaact 21866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 816 - 844
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  816 ttaggcttaattgcacttttggaccccta 844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 149 - 121
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  149 ttaggcttaattgcacttttggaccccta 121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 186 - 158
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  186 ttaggcttaattgcacttttggaccccta 158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 4837 - 4809
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  4837 ttaggcttaattgcacttttggaccccta 4809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 6865 - 6893
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
    |||||||||||||||||||||||||||||    
T  6865 ttaggcttaattgcacttttggaccccta 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 238619 - 238647
Alignment:
Q  205 ttaggcttaattgcacttttggaccccta 233  Q
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T  238619 ttaggcttaattgcacttttggaccccta 238647  T

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