View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_37 (Length: 214)
Name: NF2281_low_37
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 51523915 - 51524111
Alignment:
| Q |
1 |
tctcactcccacactccacttttgcctcttctcccaatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51523915 |
tctcactcccacactccacttttgcttcttctcccaatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagt |
51524014 |
T |
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| Q |
101 |
tatcaccgttttacaaaaagtcatctctattttatcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51524015 |
tatcaccgttttacaaaaagtcatctctattttatcacgcttcactaatgtctttggtcactctcgcacctcaaacgccgtttcggattgcctcgat |
51524111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 51530219 - 51530355
Alignment:
| Q |
1 |
tctcactcccacactccacttttgcctcttctcccaatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagt |
100 |
Q |
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|||||||||| |||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| | ||||| |
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| T |
51530219 |
tctcactccctcactccacatctgcttcttctcccaataactttgttggttcatccctcagagtttctcccaccaaattttccaactctgccaatgaagt |
51530318 |
T |
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| Q |
101 |
tatcaccgttttacaaaaagtcatctctattttatca |
137 |
Q |
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|| ||||||||||||||||||| ||| ||||||||| |
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| T |
51530319 |
taaaaccgttttacaaaaagtcacctccattttatca |
51530355 |
T |
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