View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2281_low_4 (Length: 474)
Name: NF2281_low_4
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2281_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 22039562 - 22039224
Alignment:
| Q |
16 |
gatctgccatcttaatttaatttgtcttatgctaagctagcattgctcttgcctttatatagtgatagttaattcatggatttcatccataaataataat |
115 |
Q |
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| T |
22039562 |
gatctgccatcttaatt-aatttgtcttatgctaagctagcattgctcttgcctttatatagtgatagttaattcatggatttcatccataaataataat |
22039464 |
T |
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| Q |
116 |
ttaatgaatgggtcaactgccttgttcaacaagctcaaaatttcgaaaataaaatattcaatgcttataaagaatta--------------gtaaagtta |
201 |
Q |
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| T |
22039463 |
ttaatgaatgggtcaattgccttgttcaacaagctcaaaatttcgaaaataaaatattcaatgcttataaagaattagtaataacttgttggtaaagtta |
22039364 |
T |
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| Q |
202 |
atatcgaagaagcttccttcagttcctcaccttcatttgttaattaatcgtggcatgtccgccccaccatatcgcacttgccttattttctccacccact |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
22039363 |
atatcgaagaagcttccttcagttcctcaccttcattttttaattaatcgtggcatgtccgccccaccacatcgcacttgcgttattttctccacccact |
22039264 |
T |
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| Q |
302 |
gcattgaatgataatttttaaaggagatttctttgtccct |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22039263 |
acattgaatgataatttttaaaggagatttctttgtccct |
22039224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 22039212 - 22039137
Alignment:
| Q |
389 |
cagagagagaattctttgatacactaaaatcattttgagaataggtaccttcgtaaaataaatttaaagagtatta |
464 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
22039212 |
cagagagagaattctttgatacactaaaatcactttgagaataggtaccttcataaaataaatttaaagattatta |
22039137 |
T |
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