View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2281_low_5 (Length: 446)

Name: NF2281_low_5
Description: NF2281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2281_low_5
NF2281_low_5
[»] chr7 (2 HSPs)
chr7 (18-406)||(1322618-1323007)
chr7 (149-196)||(10289260-10289307)
[»] chr5 (1 HSPs)
chr5 (215-398)||(28201412-28201599)
[»] chr8 (2 HSPs)
chr8 (257-360)||(26161922-26162027)
chr8 (32-103)||(26161678-26161749)
[»] chr1 (2 HSPs)
chr1 (257-353)||(36386566-36386663)
chr1 (149-196)||(43407836-43407883)
[»] chr3 (3 HSPs)
chr3 (41-145)||(27758843-27758947)
chr3 (145-214)||(27758964-27759034)
chr3 (149-196)||(7337163-7337210)
[»] scaffold0054 (2 HSPs)
scaffold0054 (279-397)||(31681-31800)
scaffold0054 (18-101)||(31216-31299)
[»] chr6 (1 HSPs)
chr6 (18-88)||(21511077-21511147)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 1323007 - 1322618
Alignment:
Q  18 gtaaggacacttttccattcttatcataattgtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaataaaagt 117  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1323007 gtaaggacacttttccatacttatcataattgtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaatgaaagt 1322908  T
Q  118 aaaacacaactttaagtggtaaaatttatgattttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaatgatatatgtgaagaaacatg 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1322907 aaaacacaactttatgtggtaaaatttatgattttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaatgatatatgtgaagaaacatg 1322808  T
Q  218 tgttgtgat-tttgagaaataaatgttagattttgatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggttttgggtca 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1322807 tgttgtgatgtttgagaaataaatgttagattttgatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggttttgggtca 1322708  T
Q  317 tgtgcatgatgattattaatagttgattgtgtttgccttagtggttggataggattcatgtcattcatatcatatgcattttgtgtgcct 406  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  1322707 tgtgcatgatgattattaataattgattgtgtttgttttagtggttggattgcattcatgtcattcatatcatatgcattttgtgtgcct 1322618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 10289307 - 10289260
Alignment:
Q  149 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 196  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  10289307 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 10289260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 215 - 398
Target Start/End: Original strand, 28201412 - 28201599
Alignment:
Q  215 atgtgttgtgat-tttgagaaataaatgttagatttt-gatatattaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggtttt-g 311  Q
    |||||||||||| ||||||||| |||||||||||||| |||  || ||||||||||||||||||||| |||   |||||||||||||||||||||||| |    
T  28201412 atgtgttgtgatgtttgagaaagaaatgttagatttttgatgaatcaaagaaagaaagaaaataatgaaaatgcgagttttatgaaaagattggtttttg 28201511  T
Q  312 ggtcatgtgcatgatgattattaatagttgattgtgtttgccttagtggttggataggattcat-gtcattcatatcatatgcatttt 398  Q
    ||||||||||||||||| |||||||| |||||||||||||||| |||||| |||| | || ||| ||||| ||| ||| |||||||||    
T  28201512 ggtcatgtgcatgatgaatattaatatttgattgtgtttgcctaagtggtgggattgcatccatcgtcatgcatgtcaaatgcatttt 28201599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 26161922 - 26162027
Alignment:
Q  257 ttaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattgg-ttttgggtcatgtgc-atgatgattattaatagttgattgtgtttgcct 354  Q
    ||||||||||||||||||| | |||||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  26161922 ttaaagaaagaaagaaaatcaaggaaatgtgagttttatgaaaagattggtttttgggtcatgtgcaatgatggttattaatatttgattgtgtttgcct 26162021  T
Q  355 tagtgg 360  Q
     |||||    
T  26162022 aagtgg 26162027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 26161678 - 26161749
Alignment:
Q  32 ccattcttatcataattgtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaa 103  Q
    |||| |||||||||| |||||||||| ||||||| |||| |||||||||||||| ||||||| |||||||||    
T  26161678 ccatacttatcataactgtaactaatggttaggtattatgatttaaagagtatggttcataattgttgttaa 26161749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 36386663 - 36386566
Alignment:
Q  257 ttaaagaaagaaagaaaataatggaaaaatgagttttatgaaaagattggtttt-gggtcatgtgcatgatgattattaatagttgattgtgtttgcc 353  Q
    |||||| |||||||||||| | |||||  |||||||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  36386663 ttaaaggaagaaagaaaatcaaggaaatgtgagttttatgaaaagattgatttttgggtcatgtgcatgatggttattaatatttgattgtgtttgcc 36386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 43407883 - 43407836
Alignment:
Q  149 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 196  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  43407883 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 43407836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 27758843 - 27758947
Alignment:
Q  41 tcataattgtaactaattgttaggtgttataatttaaagagtatgattcataactgttgttaagaagaaataaaagtaaaacacaactttaagtggtaaa 140  Q
    |||||| |||||||||| ||||||| |||||||||||||||||  |||||||| ||||| |||  |||||||||| ||||| ||||| ||||||||||||    
T  27758843 tcataaatgtaactaatggttaggtattataatttaaagagtacaattcataattgttgataaagagaaataaaattaaaatacaaccttaagtggtaaa 27758942  T
Q  141 attta 145  Q
    |||||    
T  27758943 attta 27758947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 27758964 - 27759034
Alignment:
Q  145 atgattttaattatgttttatatgatatttgtgcatgaggatgtgatgt-gaatgatatatgtgaagaaac 214  Q
    ||||||||||||||||   | |||||||||||| |||| |||||||||| ||||||||||| |||||||||    
T  27758964 atgattttaattatgtccaacatgatatttgtgtatgaagatgtgatgtggaatgatatatatgaagaaac 27759034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 7337210 - 7337163
Alignment:
Q  149 ttttaattatgttttatatgatatttgtgcatgaggatgtgatgtgaa 196  Q
    ||||||||||||||||||||| | ||||| ||| ||||||||||||||    
T  7337210 ttttaattatgttttatatgaaagttgtgtatgtggatgtgatgtgaa 7337163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 397
Target Start/End: Original strand, 31681 - 31800
Alignment:
Q  279 ggaaaaatgagttttatgaaaagattggtttt-gggtcatgtgcatgatgattattaatagttgattgtgtttgccttagtggttggataggattcatgt 377  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||| ||||| ||||||||||||||| ||||| || || |||    | || | ||||||||    
T  31681 ggaaatatgagttttatgaaaagattgatttttgggttatgtgtatgatcattattaatagttgactgtgtctgtctaagtaacggtattgcattcatgt 31780  T
Q  378 cattcatatcatatgcattt 397  Q
    |||||||||||| |||||||    
T  31781 cattcatatcatgtgcattt 31800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 31216 - 31299
Alignment:
Q  18 gtaaggacacttttccattcttatcataattgtaactaattgttaggtgttataatttaaagagtatgattcataactgttgtt 101  Q
    |||||| |||||  |||| |||||||||| |||||||| | |||| || ||||||||||||||| ||||||||||| |||||||    
T  31216 gtaagggcacttccccatgcttatcataactgtaactagtggttacgtattataatttaaagagcatgattcataattgttgtt 31299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 21511077 - 21511147
Alignment:
Q  18 gtaaggacacttttccattcttatcataattgtaactaattgttaggtgttataatttaaagagtatgatt 88  Q
    ||||||||||||||||||  ||||||||| | |||||||| | ||| | ||||| |||||| |||||||||    
T  21511077 gtaaggacacttttccatagttatcataactctaactaatggctagatattatagtttaaaaagtatgatt 21511147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University